{"count":543,"next":"https://cinder.proteo.info/api/subcellular_locations/?format=json&limit=20&offset=200","previous":"https://cinder.proteo.info/api/subcellular_locations/?format=json&limit=20&offset=160","results":[{"location_identifier":"Nucleomorph.","topology_identifier":null,"orientation_identifier":null,"accession":"SL-0189","definition":"Nucleomorphs are vestigial endosymbiont found in cryptomonads and chlorachniophytes algae. These organisms respectively retain an enslaved red or green algal nucleus. ","synonyms":null,"content":"Nucleomorph.","is_a":null,"part_of":null,"keyword":"KW-0542","gene_ontology":"GO:0033009; nucleomorph; ","annotation":null,"references":null,"links":null},{"location_identifier":"Nucleoplasm.","topology_identifier":null,"orientation_identifier":null,"accession":"SL-0190","definition":"The nucleoplasm is a highly viscous liquid contained within the nucleus that surrounds the chromosomes and other subnuclear organelles. A network of fibers known as the nuclear matrix can also be found in the nucleoplasm. ","synonyms":"Karyolymph; Karyoplasm.; ","content":"Nucleus, nucleoplasm.","is_a":null,"part_of":"Nucleus.; ","keyword":null,"gene_ontology":"GO:0005654; nucleoplasm; ","annotation":null,"references":null,"links":null},{"location_identifier":"Nucleus.","topology_identifier":null,"orientation_identifier":null,"accession":"SL-0191","definition":"The nucleus is the most obvious organelle in any eukaryotic cell. It is a membrane-bound organelle surrounded by double membranes which contains most of the cell's genetic material. It communicates with the surrounding cytosol via numerous nuclear pores. ","synonyms":"Nuclear; Nuclei.; ","content":"Nucleus.","is_a":null,"part_of":null,"keyword":"KW-0539","gene_ontology":"GO:0005634; nucleus; ","annotation":null,"references":null,"links":null},{"location_identifier":"Paranodal septate junction.","topology_identifier":null,"orientation_identifier":null,"accession":"SL-0192","definition":"The paranodal septate junction (PSJ) in vertebrate species is an occluding complex which occurs between neurons and the glial cells that myelinate them, the oligodendrocytes and the Schwann cells. Each glial cell wraps around and contacts the neuron multiple times in a spiral pattern to form the paranodal loops. The paranodal loops tightly adhere to the axon through a continuous spiral of axo-glial junctions that resemble invertebrate septate junctions (SJs). The paranodal loops are a spiraled cytoplasmic channel that is contiguous with the perikaryon of the myelin forming cell and thus can serve as a conduit for transmitting axonally induced signals that could regulate glial gene transcription. These junctions also form a physical barrier that prevents diffusion of nodal sodium channels and juxtaparanodal potassium channels. Axo-glial paranodal junctions, therefore, share adhesion, diffusion barrier and putative intercellular communication functions with invertebrate SJs. ","synonyms":"Paranodal junction; PSJ.; ","content":"Cell junction, paranodal septate junction.","is_a":"Cell junction.; ","part_of":null,"keyword":null,"gene_ontology":"GO:0033010; paranodal junction; ","annotation":"Add \"Cell membrane\" if the protein is clearly associated with the membrane. ","references":null,"links":null},{"location_identifier":"Parasitophorous vacuole membrane.","topology_identifier":null,"orientation_identifier":null,"accession":"SL-0193","definition":"The membrane surrounding the parasitophorous vacuole. ","synonyms":"Parasitophorous vacuolar membrane.; ","content":"Parasitophorous vacuole membrane.","is_a":"Membrane.; ","part_of":"Parasitophorous vacuole.; ","keyword":null,"gene_ontology":"GO:0020005; symbiont-containing vacuole membrane; ","annotation":null,"references":null,"links":null},{"location_identifier":"Parasitophorous vacuole.","topology_identifier":null,"orientation_identifier":null,"accession":"SL-0194","definition":"The parasitophorous vacuole is a vacuole found in the host cells where most apicomplexan parasites reside and develop. During host cell invasion, the apicomplexan parasites initiate the formation of a membrane (the parasitophorous vacuolar membrane), which surrounds the intracellular parasite. ","synonyms":null,"content":"Parasitophorous vacuole.","is_a":null,"part_of":null,"keyword":null,"gene_ontology":"GO:0020003; symbiont-containing vacuole; ","annotation":null,"references":null,"links":null},{"location_identifier":"Peribacteroid membrane.","topology_identifier":null,"orientation_identifier":null,"accession":"SL-0195","definition":"Symbiosis leads to the formation of a new compartment in the plant cell when bacteria enter the plant cell by endocytosis, the symbiosome. This compartment harbours the bacteroids surrounded by a peribacteroid membrane (PMB) originating from the plant plasma membrane. The space between this membrane and the bacteroid membrane is called the peribacteroid space. ","synonyms":null,"content":"Symbiosome, peribacteroid membrane.","is_a":"Membrane.; ","part_of":"Endomembrane system.; Symbiosome.; ","keyword":null,"gene_ontology":"GO:0043661; peribacteroid membrane; ","annotation":null,"references":null,"links":null},{"location_identifier":"Peribacteroid space.","topology_identifier":null,"orientation_identifier":null,"accession":"SL-0196","definition":"Symbiosis lead to the formation of a new compartment in the plant cell when bacteria enter the plant cell by endocytosis. This compartment harbours the bacteroids surrounded by a peribacteroid membrane (PMB) originating from the plant plasma membrane. The space between this membrane and the bacteroid membrane is called the peribacteroid space. ","synonyms":null,"content":"Symbiosome, peribacteroid space.","is_a":null,"part_of":"Symbiosome.; ","keyword":null,"gene_ontology":"GO:0043662; peribacteroid fluid; ","annotation":null,"references":null,"links":null},{"location_identifier":"Perikaryon.","topology_identifier":null,"orientation_identifier":null,"accession":"SL-0197","definition":"The perikaryon is the cell body of a neuron. ","synonyms":"cell body; Perikarya; soma.; ","content":"Perikaryon.","is_a":null,"part_of":null,"keyword":null,"gene_ontology":"GO:0043204; perikaryon; ","annotation":null,"references":null,"links":null},{"location_identifier":"Perinuclear region.","topology_identifier":null,"orientation_identifier":null,"accession":"SL-0198","definition":"The perinuclear region is the cytoplasmic region just around the nucleus. ","synonyms":"Nuclear periphery; Perinuclear region of cytoplasm.; ","content":"Cytoplasm, perinuclear region.","is_a":null,"part_of":"Cytoplasm.; ","keyword":null,"gene_ontology":"GO:0048471; perinuclear region of cytoplasm; ","annotation":null,"references":null,"links":null},{"location_identifier":"Perinuclear theca.","topology_identifier":null,"orientation_identifier":null,"accession":"SL-0199","definition":"The perinuclear theca is a cytoskeletal structure that covers the nucleus of mammalian spermatozoa except for a narrow zone around the insertion of the tail. It shows two distinct regions, a subacrosomal layer or perforatorium and, continuing caudally beyond the acrosomic system, the postacrosomal sheath. ","synonyms":null,"content":"Cytoplasm, cytoskeleton, perinuclear theca.","is_a":null,"part_of":"Cytoskeleton.; ","keyword":null,"gene_ontology":"GO:0033011; perinuclear theca; ","annotation":null,"references":null,"links":null},{"location_identifier":"Periplasm.","topology_identifier":null,"orientation_identifier":null,"accession":"SL-0200","definition":"The periplasm is the space between the inner and outer membrane in Gram-negative bacteria. In Gram-positive bacteria a smaller periplasmic space is found between the inner membrane and the peptidoglycan layer. Also used for the intermembrane spaces of fungi and organelles. ","synonyms":"Periplasmic space.; ","content":"Periplasm.","is_a":null,"part_of":"Cell envelope.; ","keyword":"KW-0574","gene_ontology":"GO:0042597; periplasmic space; ","annotation":null,"references":null,"links":null},{"location_identifier":"Periplasmic flagellum.","topology_identifier":null,"orientation_identifier":null,"accession":"SL-0201","definition":"Spirochetes have a flagellum that resides inside the cell within the periplasmic space. The number of flagella varies from species to species. The rotation of these structures results in specific movements of the cell body, which in turn enable the locomotion of the cell. In particular they impart spirochetes the ability to propel themselves through viscous media that would inhibit the rotation of external flagellar filaments. ","synonyms":"Endoflagellum; Periplasmic fibril.; ","content":"Periplasmic flagellum.","is_a":"Bacterial flagellum.; ","part_of":null,"keyword":null,"gene_ontology":"GO:0055040; periplasmic flagellum; ","annotation":null,"references":"PubMed=15170401; DOI=10.1159/000077867;; ","links":null},{"location_identifier":"Peroxisome matrix.","topology_identifier":null,"orientation_identifier":null,"accession":"SL-0202","definition":"The matrix of a peroxisome is the area enclosed by the peroxisomal membrane. ","synonyms":"Peroxisomal matrix.; ","content":"Peroxisome matrix.","is_a":null,"part_of":"Peroxisome.; ","keyword":null,"gene_ontology":"GO:0005782; peroxisomal matrix; ","annotation":null,"references":null,"links":null},{"location_identifier":"Peroxisome membrane.","topology_identifier":null,"orientation_identifier":null,"accession":"SL-0203","definition":"The membrane surrounding a peroxysome. ","synonyms":"Peroxisomal membrane.; ","content":"Peroxisome membrane.","is_a":"Membrane.; ","part_of":"Endomembrane system.; Peroxisome.; ","keyword":null,"gene_ontology":"GO:0005778; peroxisomal membrane; ","annotation":null,"references":null,"links":null},{"location_identifier":"Peroxisome.","topology_identifier":null,"orientation_identifier":null,"accession":"SL-0204","definition":"The peroxisome is a small eukaryotic organelle limited by a single membrane, specialized for carrying out oxidative reactions. Contains mainly peroxidases, several other oxidases and catalase. The catalase regulates the contents of the produced toxic hydrogen peroxide thus protecting the cell. Beta-oxidation of fatty acids is another major function of peroxisomes. In plants and fungi this degradation occurs only in this cellular compartment. ","synonyms":null,"content":"Peroxisome.","is_a":null,"part_of":null,"keyword":"KW-0576","gene_ontology":"GO:0005777; peroxisome; ","annotation":null,"references":null,"links":null},{"location_identifier":"Phagosome membrane.","topology_identifier":null,"orientation_identifier":null,"accession":"SL-0205","definition":"The membrane surrounding a phagosome. ","synonyms":"Phagocytic vesicle membrane; Phagosomal membrane.; ","content":"Cytoplasmic vesicle, phagosome membrane.","is_a":"Cytoplasmic vesicle membrane.; ","part_of":"Phagosome.; ","keyword":null,"gene_ontology":"GO:0030670; phagocytic vesicle membrane; ","annotation":null,"references":null,"links":null},{"location_identifier":"Phagosome.","topology_identifier":null,"orientation_identifier":null,"accession":"SL-0206","definition":"The phagosome is a phagocytic cell-specific compartment. These large endocytic membrane-bound vesicles form upon ingestion by the cell of extracellular materials. ","synonyms":"Phagocytic vesicle.; ","content":"Cytoplasmic vesicle, phagosome.","is_a":"Cytoplasmic vesicle.; ","part_of":null,"keyword":null,"gene_ontology":"GO:0045335; phagocytic vesicle; ","annotation":null,"references":null,"links":null},{"location_identifier":"Phragmoplast.","topology_identifier":null,"orientation_identifier":null,"accession":"SL-0207","definition":"The phragmoplast is a plant cell specific structure that forms during late cytokinesis. This complex assembly of microtubules, actin filaments and associated molecules acts as a framework for cell plate assembly and subsequent formation of the future cell wall separating the two daughter cells. ","synonyms":null,"content":"Cytoplasm, cytoskeleton, phragmoplast.","is_a":null,"part_of":"Cytoskeleton.; ","keyword":null,"gene_ontology":"GO:0009524; phragmoplast; ","annotation":null,"references":null,"links":null},{"location_identifier":"Plasmodesma.","topology_identifier":null,"orientation_identifier":null,"accession":"SL-0208","definition":"The plasmodesma (plural plasmodesmata) is a plasma membrane-lined channel that crosses the cell wall between two adjacent plant cells and which allows a cytoplasmic exchange between the cells. It provides passage of ions and small molecules, but also of macromolecules such as RNA or proteins. Plasmodesmata are sheathed by a plasma membrane that is simply an extension of the cell membrane of the adjoining cells. Most plasmodesmata have a narrow cylindrical desmotubule at the center that is derived from the ER and appears to be continuous with the ER of both cells. ","synonyms":"PD; Plasmodesmata.; ","content":"Cell junction, plasmodesma.","is_a":"Cell junction.; ","part_of":null,"keyword":null,"gene_ontology":"GO:0009506; plasmodesma; ","annotation":"Add \"Cell membrane\" if the protein is clearly associated with the membrane. ","references":null,"links":null}]}