HTTP 200 OK
Allow: GET, POST, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept
{
"count": 543,
"next": "https://cinder.proteo.info/api/subcellular_locations/?format=api&limit=20&offset=160&ordering=-location_identifier",
"previous": "https://cinder.proteo.info/api/subcellular_locations/?format=api&limit=20&offset=120&ordering=-location_identifier",
"results": [
{
"location_identifier": "Phagosome.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0206",
"definition": "The phagosome is a phagocytic cell-specific compartment. These large endocytic membrane-bound vesicles form upon ingestion by the cell of extracellular materials. ",
"synonyms": "Phagocytic vesicle.; ",
"content": "Cytoplasmic vesicle, phagosome.",
"is_a": "Cytoplasmic vesicle.; ",
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0045335; phagocytic vesicle; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Phagocytic cup.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0473",
"definition": "Cup-shaped invaginations of the cell membrane that subsequently close at their distal margins to form phagosomes during phagocytosis. By progression of its rim along the particle surface, this phagocytic cup envelops and eventually encloses the particle by separation of the phagosome membrane from the cell membrane. Filamentous actin accumulates between the outer and inner leaflet of the cup membrane and is most strongly enriched at the rim of the cup, the site of its protrusion. ",
"synonyms": null,
"content": "Cell projection, phagocytic cup.",
"is_a": "Cell projection.; ",
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0001891; phagocytic cup; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Peroxisome membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0203",
"definition": "The membrane surrounding a peroxysome. ",
"synonyms": "Peroxisomal membrane.; ",
"content": "Peroxisome membrane.",
"is_a": "Membrane.; ",
"part_of": "Endomembrane system.; Peroxisome.; ",
"keyword": null,
"gene_ontology": "GO:0005778; peroxisomal membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Peroxisome matrix.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0202",
"definition": "The matrix of a peroxisome is the area enclosed by the peroxisomal membrane. ",
"synonyms": "Peroxisomal matrix.; ",
"content": "Peroxisome matrix.",
"is_a": null,
"part_of": "Peroxisome.; ",
"keyword": null,
"gene_ontology": "GO:0005782; peroxisomal matrix; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Peroxisome.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0204",
"definition": "The peroxisome is a small eukaryotic organelle limited by a single membrane, specialized for carrying out oxidative reactions. Contains mainly peroxidases, several other oxidases and catalase. The catalase regulates the contents of the produced toxic hydrogen peroxide thus protecting the cell. Beta-oxidation of fatty acids is another major function of peroxisomes. In plants and fungi this degradation occurs only in this cellular compartment. ",
"synonyms": null,
"content": "Peroxisome.",
"is_a": null,
"part_of": null,
"keyword": "KW-0576",
"gene_ontology": "GO:0005777; peroxisome; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Perispore.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0367",
"definition": "Protein found in the perispore. The perispore corresponds to the outer surface layer of mature bacterial spores and eukaryotic spores. The perispore, also called perine or exosporium, represents the primary contact surface between the spore and environment/host and is a site of spore antigens. ",
"synonyms": "Exosporium; Perine.; ",
"content": "Spore, perispore.",
"is_a": null,
"part_of": "Spore.; ",
"keyword": null,
"gene_ontology": null,
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Periplasmic flagellum.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0201",
"definition": "Spirochetes have a flagellum that resides inside the cell within the periplasmic space. The number of flagella varies from species to species. The rotation of these structures results in specific movements of the cell body, which in turn enable the locomotion of the cell. In particular they impart spirochetes the ability to propel themselves through viscous media that would inhibit the rotation of external flagellar filaments. ",
"synonyms": "Endoflagellum; Periplasmic fibril.; ",
"content": "Periplasmic flagellum.",
"is_a": "Bacterial flagellum.; ",
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0055040; periplasmic flagellum; ",
"annotation": null,
"references": "PubMed=15170401; DOI=10.1159/000077867;; ",
"links": null
},
{
"location_identifier": "Periplasm.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0200",
"definition": "The periplasm is the space between the inner and outer membrane in Gram-negative bacteria. In Gram-positive bacteria a smaller periplasmic space is found between the inner membrane and the peptidoglycan layer. Also used for the intermembrane spaces of fungi and organelles. ",
"synonyms": "Periplasmic space.; ",
"content": "Periplasm.",
"is_a": null,
"part_of": "Cell envelope.; ",
"keyword": "KW-0574",
"gene_ontology": "GO:0042597; periplasmic space; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Perinuclear theca.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0199",
"definition": "The perinuclear theca is a cytoskeletal structure that covers the nucleus of mammalian spermatozoa except for a narrow zone around the insertion of the tail. It shows two distinct regions, a subacrosomal layer or perforatorium and, continuing caudally beyond the acrosomic system, the postacrosomal sheath. ",
"synonyms": null,
"content": "Cytoplasm, cytoskeleton, perinuclear theca.",
"is_a": null,
"part_of": "Cytoskeleton.; ",
"keyword": null,
"gene_ontology": "GO:0033011; perinuclear theca; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Perinuclear region.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0198",
"definition": "The perinuclear region is the cytoplasmic region just around the nucleus. ",
"synonyms": "Nuclear periphery; Perinuclear region of cytoplasm.; ",
"content": "Cytoplasm, perinuclear region.",
"is_a": null,
"part_of": "Cytoplasm.; ",
"keyword": null,
"gene_ontology": "GO:0048471; perinuclear region of cytoplasm; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Perikaryon.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0197",
"definition": "The perikaryon is the cell body of a neuron. ",
"synonyms": "cell body; Perikarya; soma.; ",
"content": "Perikaryon.",
"is_a": null,
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0043204; perikaryon; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Peribacteroid space.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0196",
"definition": "Symbiosis lead to the formation of a new compartment in the plant cell when bacteria enter the plant cell by endocytosis. This compartment harbours the bacteroids surrounded by a peribacteroid membrane (PMB) originating from the plant plasma membrane. The space between this membrane and the bacteroid membrane is called the peribacteroid space. ",
"synonyms": null,
"content": "Symbiosome, peribacteroid space.",
"is_a": null,
"part_of": "Symbiosome.; ",
"keyword": null,
"gene_ontology": "GO:0043662; peribacteroid fluid; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Peribacteroid membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0195",
"definition": "Symbiosis leads to the formation of a new compartment in the plant cell when bacteria enter the plant cell by endocytosis, the symbiosome. This compartment harbours the bacteroids surrounded by a peribacteroid membrane (PMB) originating from the plant plasma membrane. The space between this membrane and the bacteroid membrane is called the peribacteroid space. ",
"synonyms": null,
"content": "Symbiosome, peribacteroid membrane.",
"is_a": "Membrane.; ",
"part_of": "Endomembrane system.; Symbiosome.; ",
"keyword": null,
"gene_ontology": "GO:0043661; peribacteroid membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "P-body.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0230",
"definition": "P-bodies are dynamic non-membrane bound cytoplasmic structures. These discrete foci function in mRNA decay (decapping and breakdown), RNA- mediated gene silencing (microRNA and siRNA-based gene silencing), mRNA surveillance (or quality control) and translational control. In addition to being sites of mRNA degradation, P-bodies can temporarily sequester mRNAs away from the translation machinery. P-bodies are present in unstressed cells, but are further induced in response to various stresses. ",
"synonyms": "Cytoplasmic mRNA processing body; DCP bodies; Dcp body; Gawky bodies;; Gawky body; GW182 bodies; GW182 body; GWB; GW bodies; GW body;; mRNA-decay foci; mRNA processing bodies; mRNA processing body; PB;; P bodies; P-bodies; P body; Processing bodies; Processing body.; ",
"content": "Cytoplasm, P-body.",
"is_a": "Cytoplasmic ribonucleoprotein granule.; ",
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0000932; P-body; ",
"annotation": null,
"references": "PubMed=17183357; DOI=10.1038/nrm2080;; ",
"links": null
},
{
"location_identifier": "Parasitophorous vacuole membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0193",
"definition": "The membrane surrounding the parasitophorous vacuole. ",
"synonyms": "Parasitophorous vacuolar membrane.; ",
"content": "Parasitophorous vacuole membrane.",
"is_a": "Membrane.; ",
"part_of": "Parasitophorous vacuole.; ",
"keyword": null,
"gene_ontology": "GO:0020005; symbiont-containing vacuole membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Parasitophorous vacuole lumen.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0341",
"definition": "The parasitophorous vacuole compartment bounded by the membrane of the parasitophorous vacuole. ",
"synonyms": "Parasitophorous vacuolar lumen.; ",
"content": "Parasitophorous vacuole lumen.",
"is_a": null,
"part_of": "Parasitophorous vacuole.; ",
"keyword": null,
"gene_ontology": null,
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Parasitophorous vacuole.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0194",
"definition": "The parasitophorous vacuole is a vacuole found in the host cells where most apicomplexan parasites reside and develop. During host cell invasion, the apicomplexan parasites initiate the formation of a membrane (the parasitophorous vacuolar membrane), which surrounds the intracellular parasite. ",
"synonyms": null,
"content": "Parasitophorous vacuole.",
"is_a": null,
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0020003; symbiont-containing vacuole; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Paranodal septate junction.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0192",
"definition": "The paranodal septate junction (PSJ) in vertebrate species is an occluding complex which occurs between neurons and the glial cells that myelinate them, the oligodendrocytes and the Schwann cells. Each glial cell wraps around and contacts the neuron multiple times in a spiral pattern to form the paranodal loops. The paranodal loops tightly adhere to the axon through a continuous spiral of axo-glial junctions that resemble invertebrate septate junctions (SJs). The paranodal loops are a spiraled cytoplasmic channel that is contiguous with the perikaryon of the myelin forming cell and thus can serve as a conduit for transmitting axonally induced signals that could regulate glial gene transcription. These junctions also form a physical barrier that prevents diffusion of nodal sodium channels and juxtaparanodal potassium channels. Axo-glial paranodal junctions, therefore, share adhesion, diffusion barrier and putative intercellular communication functions with invertebrate SJs. ",
"synonyms": "Paranodal junction; PSJ.; ",
"content": "Cell junction, paranodal septate junction.",
"is_a": "Cell junction.; ",
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0033010; paranodal junction; ",
"annotation": "Add \"Cell membrane\" if the protein is clearly associated with the membrane. ",
"references": null,
"links": null
},
{
"location_identifier": "Organellar chromatophore thylakoid membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0356",
"definition": "The organellar chromatophore thylakoid membrane is an internal system of interconnected membranes that house the complexes which carry out the light reactions of photosynthesis. Found exclusively in Paulinella species, which are photosynthetic thecate amoeba. ",
"synonyms": null,
"content": "Plastid, organellar chromatophore thylakoid membrane.",
"is_a": "Plastid thylakoid membrane.; ",
"part_of": "Organellar chromatophore thylakoid.; ",
"keyword": null,
"gene_ontology": "GO:0070118; organellar chromatophore thylakoid membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Organellar chromatophore thylakoid lumen.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0355",
"definition": "The organellar chromatophore thylakoid lumen is the compartment bounded by the thylakoid membrane. Found exclusively in Paulinella species, which are photosynthetic thecate amoeba. ",
"synonyms": null,
"content": "Plastid, organellar chromatophore thylakoid lumen.",
"is_a": "Plastid thylakoid lumen.; ",
"part_of": "Organellar chromatophore thylakoid.; ",
"keyword": null,
"gene_ontology": "GO:0070117; organellar chromatophore thylakoid lumen; ",
"annotation": null,
"references": null,
"links": null
}
]
}