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{
"count": 543,
"next": "https://cinder.proteo.info/api/subcellular_locations/?format=api&limit=20&offset=180&ordering=-synonyms",
"previous": "https://cinder.proteo.info/api/subcellular_locations/?format=api&limit=20&offset=140&ordering=-synonyms",
"results": [
{
"location_identifier": "Gas vesicle.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0125",
"definition": "Gas vesicles (GV) are hollow, watertight, gas-permeable proteinaceous nanostructures found in some microorganisms. During planktonic growth they allow positioning of the organism at a favorable depth for light or nutrient acquisition. By regulating their relative GV content, aquatic microbes can perform vertical migrations. The GV is impermeable to liquid water but is highly permeable to gases and is normally filled with air. As they scatter light, they may also protect against UV light. Two main proteins are present in the gas vesicle: GvpA, an extremely hydrophobic protein which makes the ribs that form the structure, and GvpC, which binds to the outside of the ribs, helps shape the GV and stiffens it against collapse. ",
"synonyms": null,
"content": "Gas vesicle.",
"is_a": null,
"part_of": null,
"keyword": "KW-0304",
"gene_ontology": "GO:0031411; gas vesicle; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Esterosome.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0109",
"definition": "The esterosome is a crystalline inclusion body. This vesicle is filled with crystals of proteins showing sequence similarities with various esterases. The enclosing membrane has the characteristics of RER. ",
"synonyms": null,
"content": "Cytoplasmic vesicle, esterosome.",
"is_a": "Cytoplasmic vesicle.; ",
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0033117; esterosome; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Host microsome.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0405",
"definition": "The host microsomes are a heterogenous set of vesicles 20-200nm in diameter and formed from the host endoplasmic reticulum when host cells are disrupted. ",
"synonyms": null,
"content": "Host microsome.",
"is_a": null,
"part_of": "Host cell.; ",
"keyword": "KW-1044",
"gene_ontology": "GO:0033648; host intracellular membrane-bounded organelle; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Host cell junction.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0374",
"definition": "The host cell junction is a host cell-host cell or host cell-host extracellular matrix contact within a tissue of a host multicellular organism, especially abundant in host epithelia. In vertebrates, there are three major types of cell junctions: anchoring junctions (e.g. adherens junctions), communicating junctions (e.g. gap junctions) and occluding junctions (e.g. tight junctions). ",
"synonyms": null,
"content": "Host cell junction.",
"is_a": null,
"part_of": "Host.; ",
"keyword": "KW-1031",
"gene_ontology": "GO:0044156; host cell junction; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Etioplast.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0110",
"definition": "The etioplast is a plastid found in plants grown in the dark. ",
"synonyms": null,
"content": "Plastid, etioplast.",
"is_a": "Plastid.; ",
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0009513; etioplast; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Etioplast membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0329",
"definition": "The membrane surrounding the etioplast, a plastid found in plants grown in the dark. Also used when it is not clear in which etioplast membrane a protein is found. ",
"synonyms": null,
"content": "Plastid, etioplast membrane.",
"is_a": "Plastid membrane.; ",
"part_of": "Etioplast.; ",
"keyword": null,
"gene_ontology": "GO:0034426; etioplast membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Etioplast stroma.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0330",
"definition": "The etioplast stroma is the space enclosed by the double membrane of an etioplast but excluding the prothylakoid space. It contains the etioplast DNA. ",
"synonyms": null,
"content": "Plastid, etioplast stroma.",
"is_a": "Plastid stroma.; ",
"part_of": "Etioplast.; ",
"keyword": null,
"gene_ontology": "GO:0009578; etioplast stroma; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Apical lamina.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0016",
"definition": "In the sea urchin embryos the apical lamina is a fibrous meshwork that remains after removal of hyalin from the hyalin layer. ",
"synonyms": null,
"content": "Secreted, extracellular space, extracellular matrix, apical lamina.",
"is_a": "Extracellular matrix.; ",
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0032579; apical lamina of hyaline layer; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Photoreceptor inner segment membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0514",
"definition": "The membrane surrounding the inner segment of a vertebrate photoreceptor. SL Photoreceptor inner segment membrane. HI Membrane. HP Endomembrane system. HP . ",
"synonyms": null,
"content": "Photoreceptor inner segment membrane.",
"is_a": "Membrane.; ",
"part_of": "Endomembrane system.; Photoreceptor inner segment.; ",
"keyword": null,
"gene_ontology": null,
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Magnetosome membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0512",
"definition": "The magnetosome membrane. ",
"synonyms": null,
"content": "Magnetosome membrane.",
"is_a": "Membrane.; ",
"part_of": "Magnetosome.; ",
"keyword": null,
"gene_ontology": "GO:0110146; magnetosome membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Barrier septum.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0454",
"definition": "The barrier septum, is a septum which spans a cell and does not allow exchange of organelles or cytoplasm between compartments. ",
"synonyms": null,
"content": "Barrier septum.",
"is_a": "Cell septum.; ",
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0000935; division septum; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Extracellular vesicle membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0500",
"definition": "The membrane surrounding an extracellular vesicle. ",
"synonyms": null,
"content": "Extracellular vesicle membrane.",
"is_a": "Membrane.; ",
"part_of": "Extracellular vesicle.; ",
"keyword": null,
"gene_ontology": null,
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Chlorosome.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0059",
"definition": "The chlorosome is a photosynthetic light-harvesting complex found in anoxygenic green bacteria. Chlorosomes are flattened ellipsoidal organelles appressed to the cytoplasmic face of the cell membrane. They typically contain highly aggregated bacteriochlorophyll c, d, or e (Bchl), a small amount of Bchl a, carotenoids, quinones, and occasionally wax esters. The chlorosome envelope of green sulfur bacteria is an asymmetric membrane containing galactolipids with the galactosyl moieties exposed on the outer surface. The farnesyl tails of the BChl molecules within the chlorosome probably comprise the inner leaflet of this membrane. ",
"synonyms": null,
"content": "Chlorosome.",
"is_a": null,
"part_of": null,
"keyword": "KW-0151",
"gene_ontology": "GO:0046858; chlorosome; ",
"annotation": null,
"references": "PubMed=16866355; DOI=10.1021/bi060776y;; ",
"links": null
},
{
"location_identifier": "Hyaline layer.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0143",
"definition": "The hyaline layer is a multilayered extracellular matrix that coats the external surfaces of sea urchin and starfish embryos. ",
"synonyms": null,
"content": "Secreted, extracellular space, extracellular matrix, hyaline layer.",
"is_a": "Extracellular matrix.; ",
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0033166; hyaline layer; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Host cytoplasmic vesicle.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0386",
"definition": "The host cytoplasmic vesicles mediate vesicular transport among the organelles of host secretory and endocytic systems. ",
"synonyms": null,
"content": "Host cytoplasmic vesicle.",
"is_a": null,
"part_of": "Host cell.; ",
"keyword": "KW-1036",
"gene_ontology": "GO:0044161; host cell cytoplasmic vesicle; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Host cellular thylakoid.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0429",
"definition": "The host cellular thylakoids are formed usually by extensive invaginations of the host cyanobacterial cell membrane. In Synechocystis sp. strain PCC 6803, the thylakoid membranes are physically discontinuous from the plasma membrane, and thus represent bona fide intracellular organelles. ",
"synonyms": null,
"content": "Host cellular thylakoid.",
"is_a": "Host thylakoid.; ",
"part_of": "Host cell.; ",
"keyword": null,
"gene_ontology": "GO:0044159; host thylakoid; ",
"annotation": "Use only in cyanobacteria, not eukaryotes ",
"references": null,
"links": null
},
{
"location_identifier": "Flagellar pocket.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0116",
"definition": "The flagellar pocket is a structure found in trypanosomes. The flagellar pocket is formed by an invagination in the plasma membrane where the flagellum emerges from the cell body. This pocket provides the portal through which most of the dynamic interactions with the host occur. ",
"synonyms": null,
"content": "Flagellar pocket.",
"is_a": null,
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0020016; ciliary pocket; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Chromaffin granule.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0061",
"definition": "A chromaffin granule is a specialized secretory vesicle characteristic of chromaffin cells. ",
"synonyms": null,
"content": "Cytoplasmic vesicle, secretory vesicle, chromaffin granule.",
"is_a": "Secretory vesicle.; ",
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0042583; chromaffin granule; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Basement membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0025",
"definition": "The basement membrane is a highly specialized extracellular matrix structure undelying the basal surface of cells exhibiting polarity (epithelial, endothelial and mesothelial cells) and surrounding certain cell types such as muscle, adipose and Schwann cells. ",
"synonyms": null,
"content": "Secreted, extracellular space, extracellular matrix, basement membrane.",
"is_a": "Extracellular matrix.; ",
"part_of": null,
"keyword": "KW-0084",
"gene_ontology": "GO:0005604; basement membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Rough endoplasmic reticulum membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0237",
"definition": "The membrane surrounding the rough endoplasmic reticulum. ",
"synonyms": null,
"content": "Rough endoplasmic reticulum membrane.",
"is_a": "Endoplasmic reticulum membrane.; ",
"part_of": "Rough endoplasmic reticulum.; ",
"keyword": null,
"gene_ontology": "GO:0030867; rough endoplasmic reticulum membrane; ",
"annotation": null,
"references": null,
"links": null
}
]
}