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{
"count": 543,
"next": "https://cinder.proteo.info/api/subcellular_locations/?format=api&limit=20&offset=260&ordering=synonyms",
"previous": "https://cinder.proteo.info/api/subcellular_locations/?format=api&limit=20&offset=220&ordering=synonyms",
"results": [
{
"location_identifier": "Organellar chromatophore stroma.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0353",
"definition": "The internal space enclosed by the organellar chromatophore double membrane but excluding the thylakoid space. This space, filled with a colorless hydrophilic matrix, contains DNA, ribosomes and some temporary products of photosynthesis; other biosynthetic functions that could also occur there include amino acid, fatty acid and some cofactor biosynthesis. Found exclusively in Paulinella species, which are photosynthetic thecate amoeba. ",
"synonyms": "Organellar chromatophore plasma.; ",
"content": "Plastid, organellar chromatophore stroma.",
"is_a": "Plastid stroma.; ",
"part_of": "Organellar chromatophore.; ",
"keyword": null,
"gene_ontology": null,
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Cell outer membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0040",
"definition": "The prokaryotic outer cell membrane is the selectively permeable membrane which separates the prokaryotic periplasm from its cell surroundings. Traditionally only Gram-negative bacteria were thought of as having an outer membrane, but recent work has shown some Actinobacteria, including Mycobacterium tuberculosis, as well as at least 1 archaea (Ignicoccus hospitalis) have a cell outer membrane. ",
"synonyms": "Outer membrane.; ",
"content": "Cell outer membrane.",
"is_a": "Membrane.; ",
"part_of": null,
"keyword": "KW-0998",
"gene_ontology": "GO:0009279; cell outer membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Plastid outer membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0214",
"definition": "The outer membrane of a plastid is the membrane facing the cytoplasm. ",
"synonyms": "Outer plastidic membrane; Outer plastid membrane;; Plastidic outer membrane.; ",
"content": "Plastid outer membrane.",
"is_a": "Plastid membrane.; ",
"part_of": null,
"keyword": "KW-1002",
"gene_ontology": "GO:0009527; plastid outer membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Septate junction.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0246",
"definition": "The septate junction (SJ) in invertebrates is an occluding complex located basolateral to the adherens junction which have regularly spaced septa bridging a circa 15-nm intercellular space. SJs form the paracellular barrier that regulates passage of solutes through the spaces between adjacent cells in an epithelium for proper nutrient absorption or secretion. ",
"synonyms": "Paired septate junction; Pleated septate junction; SJ.; ",
"content": "Cell junction, septate junction.",
"is_a": "Cell junction.; ",
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0005918; septate junction; ",
"annotation": "Add \"Cell membrane\" if the protein is clearly associated with the membrane. ",
"references": null,
"links": null
},
{
"location_identifier": "Paranodal septate junction.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0192",
"definition": "The paranodal septate junction (PSJ) in vertebrate species is an occluding complex which occurs between neurons and the glial cells that myelinate them, the oligodendrocytes and the Schwann cells. Each glial cell wraps around and contacts the neuron multiple times in a spiral pattern to form the paranodal loops. The paranodal loops tightly adhere to the axon through a continuous spiral of axo-glial junctions that resemble invertebrate septate junctions (SJs). The paranodal loops are a spiraled cytoplasmic channel that is contiguous with the perikaryon of the myelin forming cell and thus can serve as a conduit for transmitting axonally induced signals that could regulate glial gene transcription. These junctions also form a physical barrier that prevents diffusion of nodal sodium channels and juxtaparanodal potassium channels. Axo-glial paranodal junctions, therefore, share adhesion, diffusion barrier and putative intercellular communication functions with invertebrate SJs. ",
"synonyms": "Paranodal junction; PSJ.; ",
"content": "Cell junction, paranodal septate junction.",
"is_a": "Cell junction.; ",
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0033010; paranodal junction; ",
"annotation": "Add \"Cell membrane\" if the protein is clearly associated with the membrane. ",
"references": null,
"links": null
},
{
"location_identifier": "Parasitophorous vacuole lumen.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0341",
"definition": "The parasitophorous vacuole compartment bounded by the membrane of the parasitophorous vacuole. ",
"synonyms": "Parasitophorous vacuolar lumen.; ",
"content": "Parasitophorous vacuole lumen.",
"is_a": null,
"part_of": "Parasitophorous vacuole.; ",
"keyword": null,
"gene_ontology": null,
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Parasitophorous vacuole membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0193",
"definition": "The membrane surrounding the parasitophorous vacuole. ",
"synonyms": "Parasitophorous vacuolar membrane.; ",
"content": "Parasitophorous vacuole membrane.",
"is_a": "Membrane.; ",
"part_of": "Parasitophorous vacuole.; ",
"keyword": null,
"gene_ontology": "GO:0020005; symbiont-containing vacuole membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Preautophagosomal structure membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0221",
"definition": "The membrane surrounding the pre-autophagosomal structure. ",
"synonyms": "PAS membrane; Pre-autophagosomal structure membrane.; ",
"content": "Preautophagosomal structure membrane.",
"is_a": "Membrane.; ",
"part_of": "Endomembrane system.; Preautophagosomal structure.; ",
"keyword": null,
"gene_ontology": "GO:0034045; phagophore assembly site membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Preautophagosomal structure.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0220",
"definition": "The pre-autophagosomal structure is the potential site of organization for autophagosome formation located near the vacuole. ",
"synonyms": "PAS; Phagophore assembly site; Pre-autophagosomal structure.; ",
"content": "Preautophagosomal structure.",
"is_a": null,
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0000407; phagophore assembly site; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Host pathogen-containing vacuole.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0507",
"definition": "A host-derived vacuole formed upon pathogen internalization by a host cell, within which the pathogen resides. The pathogen extensively modifies the vacuole membrane and contents, as well as its fate, in the process protecting the pathogen from destruction. ",
"synonyms": "Pathogen inclusion.; ",
"content": "Host vacuole, host pathogen-containing vacuole.",
"is_a": null,
"part_of": "Host vacuole.; ",
"keyword": null,
"gene_ontology": "GO:0140220; pathogen-containing vacuole; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Host pathogen-containing vacuole lumen.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0508",
"definition": "The volume enclosed in a host-derived vacuole formed upon pathogen internalization by a host cell. ",
"synonyms": "Pathogen inclusion lumen.; ",
"content": "Host vacuole, host pathogen-containing vacuole, host pathogen-containing vacuole lumen.",
"is_a": "Host pathogen-containing vacuole.; ",
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0140222; pathogen-containing vacuole lumen; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Host pathogen-containing vacuole membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0509",
"definition": "The host-derived membrane which encloses a vacuole formed upon pathogen internalization by a host cell. ",
"synonyms": "Pathogen inclusion membrane.; ",
"content": "Host vacuole, host pathogen-containing vacuole, host pathogen-containing vacuole membrane.",
"is_a": "Host membrane.; ",
"part_of": "Host pathogen-containing vacuole.; ",
"keyword": null,
"gene_ontology": "GO:0140221; pathogen-containing vacuole membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Plasmodesma.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0208",
"definition": "The plasmodesma (plural plasmodesmata) is a plasma membrane-lined channel that crosses the cell wall between two adjacent plant cells and which allows a cytoplasmic exchange between the cells. It provides passage of ions and small molecules, but also of macromolecules such as RNA or proteins. Plasmodesmata are sheathed by a plasma membrane that is simply an extension of the cell membrane of the adjoining cells. Most plasmodesmata have a narrow cylindrical desmotubule at the center that is derived from the ER and appears to be continuous with the ER of both cells. ",
"synonyms": "PD; Plasmodesmata.; ",
"content": "Cell junction, plasmodesma.",
"is_a": "Cell junction.; ",
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0009506; plasmodesma; ",
"annotation": "Add \"Cell membrane\" if the protein is clearly associated with the membrane. ",
"references": null,
"links": null
},
{
"location_identifier": "Presynaptic endocytic zone.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0529",
"definition": "Region of the presynaptic membrane and underlying cytoplasm that surrounds the active zone and where synaptic vesicles are endocytosed and recycled following release. ",
"synonyms": "Periactive zone; Peri-active zone.; ",
"content": "Presynaptic endocytic zone.",
"is_a": null,
"part_of": "Presynapse.; ",
"keyword": null,
"gene_ontology": "GO:0098833; presynaptic endocytic zone; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Periplasm.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0200",
"definition": "The periplasm is the space between the inner and outer membrane in Gram-negative bacteria. In Gram-positive bacteria a smaller periplasmic space is found between the inner membrane and the peptidoglycan layer. Also used for the intermembrane spaces of fungi and organelles. ",
"synonyms": "Periplasmic space.; ",
"content": "Periplasm.",
"is_a": null,
"part_of": "Cell envelope.; ",
"keyword": "KW-0574",
"gene_ontology": "GO:0042597; periplasmic space; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Peroxisome matrix.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0202",
"definition": "The matrix of a peroxisome is the area enclosed by the peroxisomal membrane. ",
"synonyms": "Peroxisomal matrix.; ",
"content": "Peroxisome matrix.",
"is_a": null,
"part_of": "Peroxisome.; ",
"keyword": null,
"gene_ontology": "GO:0005782; peroxisomal matrix; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Peroxisome membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0203",
"definition": "The membrane surrounding a peroxysome. ",
"synonyms": "Peroxisomal membrane.; ",
"content": "Peroxisome membrane.",
"is_a": "Membrane.; ",
"part_of": "Endomembrane system.; Peroxisome.; ",
"keyword": null,
"gene_ontology": "GO:0005778; peroxisomal membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Phagosome.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0206",
"definition": "The phagosome is a phagocytic cell-specific compartment. These large endocytic membrane-bound vesicles form upon ingestion by the cell of extracellular materials. ",
"synonyms": "Phagocytic vesicle.; ",
"content": "Cytoplasmic vesicle, phagosome.",
"is_a": "Cytoplasmic vesicle.; ",
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0045335; phagocytic vesicle; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Phagosome lumen.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0342",
"definition": "The phagosomal compartment bounded by the membrane a phagosome. ",
"synonyms": "Phagocytic vesicle lumen; Phagosomal lumen.; ",
"content": "Cytoplasmic vesicle, phagosome lumen.",
"is_a": "Cytoplasmic vesicle lumen.; ",
"part_of": "Phagosome.; ",
"keyword": null,
"gene_ontology": null,
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Phagosome membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0205",
"definition": "The membrane surrounding a phagosome. ",
"synonyms": "Phagocytic vesicle membrane; Phagosomal membrane.; ",
"content": "Cytoplasmic vesicle, phagosome membrane.",
"is_a": "Cytoplasmic vesicle membrane.; ",
"part_of": "Phagosome.; ",
"keyword": null,
"gene_ontology": "GO:0030670; phagocytic vesicle membrane; ",
"annotation": null,
"references": null,
"links": null
}
]
}