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{
"count": 543,
"next": "https://cinder.proteo.info/api/subcellular_locations/?format=api&limit=20&offset=340&ordering=synonyms",
"previous": "https://cinder.proteo.info/api/subcellular_locations/?format=api&limit=20&offset=300&ordering=synonyms",
"results": [
{
"location_identifier": "Zymogen granule membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0549",
"definition": "The membrane surrounding zymogen granules. ",
"synonyms": null,
"content": "Zymogen granule membrane.",
"is_a": "Secretory vesicle membrane.; ",
"part_of": "Zymogen granule.; ",
"keyword": null,
"gene_ontology": "GO:0042589; zymogen granule membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Acidocalcisome.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0002",
"definition": "The acidocalcisome is an electron-dense acidic organelle which contains a matrix of pyrophosphate and polyphosphates with bound calcium and other cations. Its limiting membrane possesses a number of pumps and exchangers for the uptake and release of these elements. The acidocalcisome does not belong to the endocytic pathway and may represent a branch of the secretory pathway in trypanosomatids and apicomplexan parasites. The acidocalcisome is possibly involved in polyphosphate and cation storage and in adaptation of these microoganisms to environmental stress. ",
"synonyms": null,
"content": "Acidocalcisome.",
"is_a": null,
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0020022; acidocalcisome; ",
"annotation": null,
"references": "PubMed=15738951; DOI=10.1038/nrmicro1097;; ",
"links": null
},
{
"location_identifier": "Amyloplast.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0012",
"definition": "The amyloplast is a colorless plant plastid that forms and stores starch. Amyloplasts are found in many tissues, particularly in storage tissues. They are found in both photosynthetic and parasitic plants, i.e. even in plants that are not capable of photosynthesis. Many amyloplast proteins are also expressed in photosynthetic tissue. ",
"synonyms": null,
"content": "Plastid, amyloplast.",
"is_a": "Plastid.; ",
"part_of": null,
"keyword": "KW-0035",
"gene_ontology": "GO:0009501; amyloplast; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Amyloplast membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0014",
"definition": "The membrane surrounding the amyloplast. Also used when it is not clear in which amyloplast membrane a protein is found. ",
"synonyms": null,
"content": "Plastid, amyloplast membrane.",
"is_a": "Plastid membrane.; ",
"part_of": "Amyloplast.; ",
"keyword": null,
"gene_ontology": "GO:0033097; amyloplast membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Anammoxosome.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0491",
"definition": "The anammoxosome is a large intracytoplasmic compartment bounded by a single bilayer, ladderane-lipid-containing membrane present in bacteria that perform anaerobic ammonium oxidation (anammox). This organelle is the site of the anammox process, in which nitrite is used as the electron acceptor in the conversion of ammonium to dinitrogen (N2) gas and water. Anammox bacteria belong to the phylum Planctomycetes and are recognized as major players in the global nitrogen cycle. ",
"synonyms": null,
"content": "Anammoxosome.",
"is_a": null,
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0044222; anammoxosome; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Anammoxosome membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0492",
"definition": "The membrane of the anammoxosome, a single bilayer membrane that contains unusual lipids, i.e. the so-called ladderane lipids, which appear to be unique for anammox bacteria. ",
"synonyms": null,
"content": "Anammoxosome membrane.",
"is_a": "Membrane.; ",
"part_of": "Anammoxosome.; ",
"keyword": null,
"gene_ontology": null,
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Apical lamina.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0016",
"definition": "In the sea urchin embryos the apical lamina is a fibrous meshwork that remains after removal of hyalin from the hyalin layer. ",
"synonyms": null,
"content": "Secreted, extracellular space, extracellular matrix, apical lamina.",
"is_a": "Extracellular matrix.; ",
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0032579; apical lamina of hyaline layer; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Apoplast.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0019",
"definition": "The apoplast is the \"non-living\" extracellular space that surrounds the symplast. It consists of cell walls and spaces between cells. Water and solutes can move freely in this framework, except at the endodermis in roots and stems where the apoplastic flow of ions is interrupted by the Casparian strip, forcing water to flow to symplast. ",
"synonyms": null,
"content": "Secreted, extracellular space, apoplast.",
"is_a": "Extracellular space.; ",
"part_of": null,
"keyword": "KW-0052",
"gene_ontology": "GO:0048046; apoplast; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Ascus epiplasm.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0538",
"definition": "Ascus cytoplasm that is not packaged into ascospores. ",
"synonyms": null,
"content": "Ascus epiplasm.",
"is_a": null,
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0072324; ascus epiplasm; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Autolysosome membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0536",
"definition": "The membrane surrounding the autolysosome. ",
"synonyms": null,
"content": "Autolysosome membrane.",
"is_a": "Membrane.; ",
"part_of": "Autolysosome.; ",
"keyword": null,
"gene_ontology": "GO:0120281; autolysosome membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Chloroplast thylakoid.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0056",
"definition": "The thylakoid of a chloroplast is an internal system of interconnected membranes, that carry out the light reactions of photosynthesis. They are arranged into stacked and unstacked regions called grana and stroma thylakoids, respectively, that are differentially enriched in photosystem I and II complexes. Although extensive, the thylakoid network in an individual chloroplast is thought to comprise a single lumenal compartment. ",
"synonyms": null,
"content": "Plastid, chloroplast thylakoid.",
"is_a": "Plastid thylakoid.; ",
"part_of": "Chloroplast.; ",
"keyword": null,
"gene_ontology": "GO:0009534; chloroplast thylakoid; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Barrier septum.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0454",
"definition": "The barrier septum, is a septum which spans a cell and does not allow exchange of organelles or cytoplasm between compartments. ",
"synonyms": null,
"content": "Barrier septum.",
"is_a": "Cell septum.; ",
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0000935; division septum; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Basement membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0025",
"definition": "The basement membrane is a highly specialized extracellular matrix structure undelying the basal surface of cells exhibiting polarity (epithelial, endothelial and mesothelial cells) and surrounding certain cell types such as muscle, adipose and Schwann cells. ",
"synonyms": null,
"content": "Secreted, extracellular space, extracellular matrix, basement membrane.",
"is_a": "Extracellular matrix.; ",
"part_of": null,
"keyword": "KW-0084",
"gene_ontology": "GO:0005604; basement membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Bleb.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0472",
"definition": "These cellular membrane protrusions are the result of actomyosin contractions of the cortex, which cause either transient detachment of the cell membrane from the actin cortex or a rupture in the actin cortex. Then, cytosol streams out of the cell body and inflates the newly formed bleb. Once expansion slows, an actin cortex is reconstituted. Retraction is powered by myosin motor proteins. Blebbing is a common feature of cell physiology during cell movement, cytokinesis, cell spreading and apoptosis. ",
"synonyms": null,
"content": "Cell projection, bleb.",
"is_a": "Cell projection.; ",
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0032059; bleb; ",
"annotation": null,
"references": "PubMed=17318224; DOI=10.1038/nrm2122;; ",
"links": null
},
{
"location_identifier": "Chloroplast thylakoid lumen.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0057",
"definition": "The chloroplast thylakoid lumen is the chloroplast compartment bounded by the thylakoid membranes. ",
"synonyms": null,
"content": "Plastid, chloroplast thylakoid lumen.",
"is_a": "Plastid thylakoid lumen.; ",
"part_of": "Chloroplast thylakoid.; ",
"keyword": null,
"gene_ontology": "GO:0009543; chloroplast thylakoid lumen; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Cytolytic granule membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0547",
"definition": "The cytolytic granule membrane is the membrane surrounding a cytolytic granule. ",
"synonyms": null,
"content": "Cytolytic granule membrane.",
"is_a": "Lysosome membrane.; ",
"part_of": "Cytolytic granule.; ",
"keyword": null,
"gene_ontology": "GO:0101004; cytolytic granule membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Capsule.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0033",
"definition": "The capsule is a protective structure surrounding some bacteria or fungi. The bacterial capsule is a layer of material, usually polysaccharide, attached to the cell wall possibly via covalent attachments to either phospholipid or lipid-A molecules. It has several functions: promote bacterial adhesion to surfaces or interaction with other organisms; act as a permeability barrier, as a defense mechanism against phagocytosis and/or as a nutrient reserve. Among pathogens, capsule formation often correlates with pathogenicity. The fungal capsule is an extracellular layer which lies outside the cell wall and it is usually composed of polysaccharides. It protects the cell from different environmental dangers such as phagocytosis, dessication, etc. ",
"synonyms": null,
"content": "Secreted, capsule.",
"is_a": null,
"part_of": "Cell envelope.; Secreted.; ",
"keyword": null,
"gene_ontology": "GO:0042603; capsule; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Carboxysome.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0034",
"definition": "Carboxysomes are bacterial microcompartments in which ribulose bisphosphate carboxylase (RuBisCO)-mediated CO(2) fixation occurs. The cytoplasmic polyhedral inclusion bodies are surrounded by a thin protein coat. They enhance autotrophic CO(2) fixation in air by increasing the CO(2) concentration around RuBisCO, thus reducing its reaction with O(2), a competing substrate. They contain carbonic anhydrase as part of the CO(2) concentration mechanism. ",
"synonyms": null,
"content": "Carboxysome.",
"is_a": "Bacterial microcompartment.; ",
"part_of": null,
"keyword": "KW-1282",
"gene_ontology": "GO:0031470; carboxysome; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Cell cortex.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0138",
"definition": "The cell cortex is the cytoplasmic region under the cell membrane. ",
"synonyms": null,
"content": "Cytoplasm, cell cortex.",
"is_a": null,
"part_of": "Cytoplasm.; ",
"keyword": null,
"gene_ontology": "GO:0005938; cell cortex; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Cell junction.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0038",
"definition": "The cell junction is a cell-cell or cell-extracellular matrix contact within a tissue of a multicellular organism, especially abundant in epithelia. In vertebrates, there are three major types of cell junctions: anchoring junctions (e.g. adherens junctions), communicating junctions (e.g. gap junctions) and occluding junctions (e.g. tight junctions). ",
"synonyms": null,
"content": "Cell junction.",
"is_a": null,
"part_of": null,
"keyword": "KW-0965",
"gene_ontology": "GO:0070161; anchoring junction; ",
"annotation": "Add \"Cell membrane\" if the protein is clearly associated with the membrane. ",
"references": null,
"links": "https://www.ncbi.nlm.nih.gov/books/NBK26857/; "
}
]
}