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{
"count": 543,
"next": "https://cinder.proteo.info/api/subcellular_locations/?format=api&limit=20&offset=420&ordering=-location_identifier",
"previous": "https://cinder.proteo.info/api/subcellular_locations/?format=api&limit=20&offset=380&ordering=-location_identifier",
"results": [
{
"location_identifier": "Cytosol.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0091",
"definition": "The cytosol is the unstructured aqueous phase of the cytoplasm excluding organelles, membranes, and insoluble cytoskeletal components. ",
"synonyms": null,
"content": "Cytoplasm, cytosol.",
"is_a": null,
"part_of": "Cytoplasm.; ",
"keyword": null,
"gene_ontology": "GO:0005829; cytosol; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Cytoskeleton.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0090",
"definition": "The cytoskeleton is a dynamic three-dimensional filamentous structure in the cytoplasm. Its roles include maintenance of cell shape, cell movement (in eukaryotes), cytokinesis, and the organization of organelles or organelle-like structures within the cell. The cytoskeleton includes microfilaments (actin-like proteins), microtubules (tubulin-like proteins), the intermediate filaments (mostly in eukaryotes) and the MinD-ParA proteins, which appear to be unique to prokaryotes. ",
"synonyms": null,
"content": "Cytoplasm, cytoskeleton.",
"is_a": null,
"part_of": "Cytoplasm.; ",
"keyword": "KW-0206",
"gene_ontology": "GO:0005856; cytoskeleton; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Cytoplasmic vesicle membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0089",
"definition": "The membrane surrounding a cytoplasmic vesicle. The cytoplasmic vesicles mediate vesicular transport among the organelles of secretory and endocytic systems. ",
"synonyms": null,
"content": "Cytoplasmic vesicle membrane.",
"is_a": "Membrane.; ",
"part_of": "Cytoplasmic vesicle.; Endomembrane system.; ",
"keyword": null,
"gene_ontology": "GO:0030659; cytoplasmic vesicle membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Cytoplasmic vesicle lumen.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0325",
"definition": "The cytoplasmic vesicle compartment bounded by the cytoplasmic vesicle membrane. ",
"synonyms": null,
"content": "Cytoplasmic vesicle lumen.",
"is_a": null,
"part_of": "Cytoplasmic vesicle.; ",
"keyword": null,
"gene_ontology": "GO:0060205; cytoplasmic vesicle lumen; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Cytoplasmic vesicle.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0088",
"definition": "The cytoplasmic vesicles mediate vesicular transport among the organelles of secretory and endocytic systems. These transport vesicles are classified by the identity of the protein coat used in their formation and also by the cargo they contain, e.g. clathrin-, COPI-, and COPII-coated vesicles, synaptic vesicles, secretory vesicles, phagosomes, etc. ",
"synonyms": null,
"content": "Cytoplasmic vesicle.",
"is_a": "Vesicle.; ",
"part_of": null,
"keyword": "KW-0968",
"gene_ontology": null,
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Cytoplasmic ribonucleoprotein granule.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0495",
"definition": "Cytoplasmic ribonucleoprotein granule is a collective term for distinct protein and RNA foci inside the cytoplasm, including processing bodies (P-bodies), U snRNP bodies (U-bodies), stress granules, neuronal ribonucleoprotein granule (neuronal transport granule) and germ granules (germline granules). ",
"synonyms": "Cytoplasmic mRNP granule; Cytoplasmic mRNP granules; mRNP granule;; mRNP granules.; ",
"content": "Cytoplasm, Cytoplasmic ribonucleoprotein granule.",
"is_a": null,
"part_of": "Cytoplasm.; ",
"keyword": null,
"gene_ontology": "GO:0036464; cytoplasmic ribonucleoprotein granule; ",
"annotation": "The synonym \"cytoplasmic body/bodies\" is also used to indicate cytoplasmic speckles or foci. In this case, the location \"Cytoplasmic ribonucleoprotein granule\" does not apply. ",
"references": "PubMed=25531407; DOI=10.4161/15476286.2014.972208;; ",
"links": null
},
{
"location_identifier": "Cytoplasmic granule membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0282",
"definition": "The membrane surrounding a cytoplasmic granule. ",
"synonyms": null,
"content": "Cytoplasmic granule membrane.",
"is_a": "Membrane.; ",
"part_of": "Endomembrane system.; Cytoplasmic granule.; ",
"keyword": null,
"gene_ontology": null,
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Cytoplasmic granule lumen.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0324",
"definition": "The cytoplasmic granule compartment bounded by the cytoplasmic granule membrane. ",
"synonyms": null,
"content": "Cytoplasmic granule lumen.",
"is_a": null,
"part_of": "Cytoplasmic granule.; ",
"keyword": null,
"gene_ontology": null,
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Cytoplasmic granule.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0281",
"definition": "Protein found in or associated with cytoplasmic granules. ",
"synonyms": null,
"content": "Cytoplasmic granule.",
"is_a": null,
"part_of": null,
"keyword": null,
"gene_ontology": null,
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Cytoplasm.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0086",
"definition": "The cytoplasm is the content of a cell within the plasma membrane and, in eukaryotics cells, surrounding the nucleus. This three-dimensional, jelly-like lattice interconnects and supports the other solid structures. The cytosol (the soluble portion of the cytoplasm outside the organelles) is mostly composed of water and many low molecular weight compounds. In eukaryotes, the cytoplasm also contains a network of cytoplasmic filaments (cytoskeleton). ",
"synonyms": null,
"content": "Cytoplasm.",
"is_a": null,
"part_of": null,
"keyword": "KW-0963",
"gene_ontology": "GO:0005737; cytoplasm; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Cytolytic granule membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0547",
"definition": "The cytolytic granule membrane is the membrane surrounding a cytolytic granule. ",
"synonyms": null,
"content": "Cytolytic granule membrane.",
"is_a": "Lysosome membrane.; ",
"part_of": "Cytolytic granule.; ",
"keyword": null,
"gene_ontology": "GO:0101004; cytolytic granule membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Cytolytic granule lumen.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0546",
"definition": "The cytolytic granule comparment bounded by the cytolytic granule membrane. ",
"synonyms": null,
"content": "Cytolytic granule lumen.",
"is_a": "Lysosome lumen.; ",
"part_of": "Cytolytic granule.; ",
"keyword": null,
"gene_ontology": null,
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Cytolytic granule.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0543",
"definition": "A specialized secretory lysosome that is present in cells with cytolytic capability such as cytotoxic T lymphocytes and natural killer cells. Cytolytic granules mediate the storage and regulated excretion of lytic molecules for killing of target cells. ",
"synonyms": "Lytic granule, cytotoxic granule.; ",
"content": "Cytolytic granule.",
"is_a": null,
"part_of": "Lysosome.; ",
"keyword": null,
"gene_ontology": "GO:0044194; cytolytic granule; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Cyanelle thylakoid membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0085",
"definition": "The lipid bilayer membrane of any thylakoid within a cyanelle, a photosynthetic organelle of glaucocystophyte algae. ",
"synonyms": null,
"content": "Plastid, cyanelle thylakoid membrane.",
"is_a": "Plastid thylakoid membrane.; ",
"part_of": "Cyanelle thylakoid.; ",
"keyword": null,
"gene_ontology": "GO:0033115; cyanelle thylakoid membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Cyanelle thylakoid lumen.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0084",
"definition": "The cyanelle thylakoid lumen is the cyanelle compartment bounded by the thylakoid membranes. ",
"synonyms": null,
"content": "Plastid, cyanelle thylakoid lumen.",
"is_a": "Plastid thylakoid lumen.; ",
"part_of": "Cyanelle thylakoid.; ",
"keyword": null,
"gene_ontology": "GO:0033114; cyanelle thylakoid lumen; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Cyanelle thylakoid.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0277",
"definition": "The cyanelle thylakoid is an internal system of interconnected photosynthetic membranes resembling that of cyanobacteria found in the cyanelles of certain algae. ",
"synonyms": null,
"content": "Plastid, cyanelle thylakoid.",
"is_a": "Plastid thylakoid.; ",
"part_of": "Cyanelle.; ",
"keyword": null,
"gene_ontology": "GO:0009843; cyanelle thylakoid; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Cyanelle stroma.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0350",
"definition": "The internal space enclosed by the cyanelle double membrane but excluding the thylakoid space. This space, filled with a colorless hydrophilic matrix, contains DNA, ribosomes and some temporary products of photosynthesis. ",
"synonyms": null,
"content": "Plastid, cyanelle stroma.",
"is_a": "Plastid stroma.; ",
"part_of": "Cyanelle.; ",
"keyword": null,
"gene_ontology": "GO:0034060; cyanelle stroma; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Cyanelle outer membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0482",
"definition": "The outer membrane of a cyanelle is the cyanelle membrane facing the cytoplasm. ",
"synonyms": null,
"content": "Plastid, cyanelle outer membrane.",
"is_a": "Cyanelle membrane.; Plastid outer membrane.; ",
"part_of": "Cyanelle envelope.; ",
"keyword": null,
"gene_ontology": "GO:0036013; cyanelle outer membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Cyanelle membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0083",
"definition": "The membrane surrounding a cyanelle, a photosynthetic organelle of glaucocystophyte algae. Also used when it is not clear in which cyanelle membrane (outer membrane, inner membrane or thylakoid) a protein is found. ",
"synonyms": null,
"content": "Plastid, cyanelle membrane.",
"is_a": "Plastid membrane.; ",
"part_of": "Cyanelle.; ",
"keyword": null,
"gene_ontology": "GO:0033113; cyanelle membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Cyanelle intermembrane space.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0481",
"definition": "The intermembrane space between the inner and the outer cyanelle membranes, it includes the vestigial peptidoglycan layer. ",
"synonyms": "Cyanelle periplasm.; ",
"content": "Plastid, cyanelle intermembrane space.",
"is_a": "Plastid intermembrane space.; ",
"part_of": "Cyanelle envelope.; ",
"keyword": null,
"gene_ontology": "GO:0036014; cyanelle intermembrane space; ",
"annotation": null,
"references": null,
"links": null
}
]
}