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{
"count": 543,
"next": "https://cinder.proteo.info/api/subcellular_locations/?format=api&limit=20&offset=420&ordering=location_identifier",
"previous": "https://cinder.proteo.info/api/subcellular_locations/?format=api&limit=20&offset=380&ordering=location_identifier",
"results": [
{
"location_identifier": "Peroxisome membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0203",
"definition": "The membrane surrounding a peroxysome. ",
"synonyms": "Peroxisomal membrane.; ",
"content": "Peroxisome membrane.",
"is_a": "Membrane.; ",
"part_of": "Endomembrane system.; Peroxisome.; ",
"keyword": null,
"gene_ontology": "GO:0005778; peroxisomal membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Phagocytic cup.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0473",
"definition": "Cup-shaped invaginations of the cell membrane that subsequently close at their distal margins to form phagosomes during phagocytosis. By progression of its rim along the particle surface, this phagocytic cup envelops and eventually encloses the particle by separation of the phagosome membrane from the cell membrane. Filamentous actin accumulates between the outer and inner leaflet of the cup membrane and is most strongly enriched at the rim of the cup, the site of its protrusion. ",
"synonyms": null,
"content": "Cell projection, phagocytic cup.",
"is_a": "Cell projection.; ",
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0001891; phagocytic cup; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Phagosome.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0206",
"definition": "The phagosome is a phagocytic cell-specific compartment. These large endocytic membrane-bound vesicles form upon ingestion by the cell of extracellular materials. ",
"synonyms": "Phagocytic vesicle.; ",
"content": "Cytoplasmic vesicle, phagosome.",
"is_a": "Cytoplasmic vesicle.; ",
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0045335; phagocytic vesicle; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Phagosome lumen.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0342",
"definition": "The phagosomal compartment bounded by the membrane a phagosome. ",
"synonyms": "Phagocytic vesicle lumen; Phagosomal lumen.; ",
"content": "Cytoplasmic vesicle, phagosome lumen.",
"is_a": "Cytoplasmic vesicle lumen.; ",
"part_of": "Phagosome.; ",
"keyword": null,
"gene_ontology": null,
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Phagosome membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0205",
"definition": "The membrane surrounding a phagosome. ",
"synonyms": "Phagocytic vesicle membrane; Phagosomal membrane.; ",
"content": "Cytoplasmic vesicle, phagosome membrane.",
"is_a": "Cytoplasmic vesicle membrane.; ",
"part_of": "Phagosome.; ",
"keyword": null,
"gene_ontology": "GO:0030670; phagocytic vesicle membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Photoreceptor inner segment.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0457",
"definition": "The inner segment of a vertebrate photoreceptor containing mitochondria, ribosomes and membranes where opsin molecules are assembled and passed to be part of the outer segment discs. ",
"synonyms": null,
"content": "Photoreceptor inner segment.",
"is_a": null,
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0001917; photoreceptor inner segment; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Photoreceptor inner segment membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0514",
"definition": "The membrane surrounding the inner segment of a vertebrate photoreceptor. SL Photoreceptor inner segment membrane. HI Membrane. HP Endomembrane system. HP . ",
"synonyms": null,
"content": "Photoreceptor inner segment membrane.",
"is_a": "Membrane.; ",
"part_of": "Endomembrane system.; Photoreceptor inner segment.; ",
"keyword": null,
"gene_ontology": null,
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Photoreceptor outer segment.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0458",
"definition": "The outer segment of a vertebrate photoreceptor that contains discs of photoreceptive membranes. ",
"synonyms": null,
"content": "Cell projection, cilium, photoreceptor outer segment.",
"is_a": "Cilium.; ",
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0001750; photoreceptor outer segment; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Photoreceptor outer segment membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0513",
"definition": "The membrane surrounding the outer segment of a vertebrate photoreceptor. ",
"synonyms": null,
"content": "Photoreceptor outer segment membrane.",
"is_a": "Membrane.; ",
"part_of": "Endomembrane system.; Photoreceptor outer segment.; ",
"keyword": null,
"gene_ontology": null,
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Phragmoplast.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0207",
"definition": "The phragmoplast is a plant cell specific structure that forms during late cytokinesis. This complex assembly of microtubules, actin filaments and associated molecules acts as a framework for cell plate assembly and subsequent formation of the future cell wall separating the two daughter cells. ",
"synonyms": null,
"content": "Cytoplasm, cytoskeleton, phragmoplast.",
"is_a": null,
"part_of": "Cytoskeleton.; ",
"keyword": null,
"gene_ontology": "GO:0009524; phragmoplast; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Plasmodesma.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0208",
"definition": "The plasmodesma (plural plasmodesmata) is a plasma membrane-lined channel that crosses the cell wall between two adjacent plant cells and which allows a cytoplasmic exchange between the cells. It provides passage of ions and small molecules, but also of macromolecules such as RNA or proteins. Plasmodesmata are sheathed by a plasma membrane that is simply an extension of the cell membrane of the adjoining cells. Most plasmodesmata have a narrow cylindrical desmotubule at the center that is derived from the ER and appears to be continuous with the ER of both cells. ",
"synonyms": "PD; Plasmodesmata.; ",
"content": "Cell junction, plasmodesma.",
"is_a": "Cell junction.; ",
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0009506; plasmodesma; ",
"annotation": "Add \"Cell membrane\" if the protein is clearly associated with the membrane. ",
"references": null,
"links": null
},
{
"location_identifier": "Plastid.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0209",
"definition": "The plastid is a semi-autonomous, self-reproducing organelle. Plastids are remnants of a photosynthetic organism that was engulfed by the host, although not all are now photosynthetic. Plastid genomes encode genes for rRNAs, tRNAs and between about 28 and 150 proteins. Plastids can be categorized in 4 main groups: chloroplasts, cyanelles, apicoplasts and non-photosynthetic. The latter are found is some land plants (Epifagus virginiana), chlorophyte algae (Prototheca wickerhamii) and euglenoids (Astasis longa), which do not encode the genes necessary for photosynthesis and so are not photosynthetic but still contain a plastid. Non-photosynthetic plastids probably do not contain thylakoids. ",
"synonyms": null,
"content": "Plastid.",
"is_a": null,
"part_of": null,
"keyword": "KW-0934",
"gene_ontology": "GO:0009536; plastid; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Plastid envelope.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0210",
"definition": "The envelope of a plastid comprises the inner and outer plastid membrane including the intermembrane space. ",
"synonyms": "Plastidic envelope.; ",
"content": "Plastid envelope.",
"is_a": null,
"part_of": "Plastid.; ",
"keyword": null,
"gene_ontology": "GO:0009526; plastid envelope; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Plastid inner membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0211",
"definition": "The inner membrane of a plastid separates the plastid stroma from the intermembrane space. ",
"synonyms": "Inner plastidic membrane; Inner plastid membrane;; Plastidic inner membrane.; ",
"content": "Plastid inner membrane.",
"is_a": "Plastid membrane.; ",
"part_of": null,
"keyword": "KW-1001",
"gene_ontology": "GO:0009528; plastid inner membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Plastid intermembrane space.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0212",
"definition": "The plastid intermembrane space is the space between the plastid inner and outer membranes. ",
"synonyms": "Plastidic intermembrane space.; ",
"content": "Plastid intermembrane space.",
"is_a": null,
"part_of": "Plastid envelope.; ",
"keyword": null,
"gene_ontology": "GO:0009529; plastid intermembrane space; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Plastid membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0213",
"definition": "The membrane surrounding or within a plastid. Also used when it is not clear in which plastid membrane (outer membrane, inner membrane or thylakoid) a protein is found. ",
"synonyms": "Plastidic membrane.; ",
"content": "Plastid membrane.",
"is_a": "Membrane.; ",
"part_of": "Plastid envelope.; ",
"keyword": null,
"gene_ontology": "GO:0042170; plastid membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Plastid nucleoid.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0140",
"definition": "The plastid nucleoid is the plastidic pseudocompartment formed by the chromatin-dense area. This region, which is functionally equivalent to the eukaryotic nucleus, is not surrounded by a membrane. ",
"synonyms": "Plastidic nucleoid.; ",
"content": "Plastid stroma, plastid nucleoid.",
"is_a": null,
"part_of": "Plastid stroma.; ",
"keyword": null,
"gene_ontology": "GO:0042646; plastid nucleoid; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Plastid outer membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0214",
"definition": "The outer membrane of a plastid is the membrane facing the cytoplasm. ",
"synonyms": "Outer plastidic membrane; Outer plastid membrane;; Plastidic outer membrane.; ",
"content": "Plastid outer membrane.",
"is_a": "Plastid membrane.; ",
"part_of": null,
"keyword": "KW-1002",
"gene_ontology": "GO:0009527; plastid outer membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Plastid stroma.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0215",
"definition": "The stroma of a plastid is the internal space enclosed by the plastid double membrane but excluding the thylakoid space. This space, filled with a colorless hydrophilic matrix. ",
"synonyms": "Plastidic stroma.; ",
"content": "Plastid stroma.",
"is_a": null,
"part_of": "Plastid.; ",
"keyword": null,
"gene_ontology": "GO:0009532; plastid stroma; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Plastid thylakoid.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0278",
"definition": "The thylakoid of a plastid is an internal system of interconnected membranes found within a plastid. ",
"synonyms": "Plastidic thylakoid.; ",
"content": "Plastid thylakoid.",
"is_a": "Thylakoid.; ",
"part_of": "Plastid.; ",
"keyword": null,
"gene_ontology": "GO:0031976; plastid thylakoid; ",
"annotation": null,
"references": null,
"links": null
}
]
}