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{
"count": 543,
"next": "https://cinder.proteo.info/api/subcellular_locations/?format=api&limit=20&offset=480&ordering=-location_identifier",
"previous": "https://cinder.proteo.info/api/subcellular_locations/?format=api&limit=20&offset=440&ordering=-location_identifier",
"results": [
{
"location_identifier": "Chloroplast thylakoid.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0056",
"definition": "The thylakoid of a chloroplast is an internal system of interconnected membranes, that carry out the light reactions of photosynthesis. They are arranged into stacked and unstacked regions called grana and stroma thylakoids, respectively, that are differentially enriched in photosystem I and II complexes. Although extensive, the thylakoid network in an individual chloroplast is thought to comprise a single lumenal compartment. ",
"synonyms": null,
"content": "Plastid, chloroplast thylakoid.",
"is_a": "Plastid thylakoid.; ",
"part_of": "Chloroplast.; ",
"keyword": null,
"gene_ontology": "GO:0009534; chloroplast thylakoid; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Chloroplast stroma.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0055",
"definition": "The internal space enclosed by the chloroplast double membrane but excluding the thylakoid space. This space, filled with a colorless hydrophilic matrix, contains DNA, ribosomes and some temporary products of photosynthesis. ",
"synonyms": "Chloroplastic stroma.; ",
"content": "Plastid, chloroplast stroma.",
"is_a": "Plastid stroma.; ",
"part_of": "Chloroplast.; ",
"keyword": null,
"gene_ontology": "GO:0009570; chloroplast stroma; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Chloroplast outer membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0054",
"definition": "The outer membrane of a chloroplast is the chloroplast membrane facing the cytoplasm. ",
"synonyms": "Chloroplastic outer membrane.; ",
"content": "Plastid, chloroplast outer membrane.",
"is_a": "Chloroplast membrane.; Plastid outer membrane.; ",
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0009707; chloroplast outer membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Chloroplast nucleoid.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0139",
"definition": "The chloroplast nucleoid is the chloroplastic pseudocompartment formed by the chromatin-dense area. This region, which is functionally equivalent to the eukaryotic nucleus, is not surrounded by a membrane. ",
"synonyms": "Chloroplastic nucleoid.; ",
"content": "Plastid, chloroplast stroma, chloroplast nucleoid.",
"is_a": null,
"part_of": "Chloroplast stroma.; ",
"keyword": null,
"gene_ontology": "GO:0042644; chloroplast nucleoid; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Chloroplast membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0053",
"definition": "The membrane surrounding a chloroplast. Also used when it is not clear in which chloroplast membrane (outer membrane, inner membrane or thylakoid) a protein is found. ",
"synonyms": "Chloroplastic membrane.; ",
"content": "Plastid, chloroplast membrane.",
"is_a": "Plastid membrane.; ",
"part_of": "Chloroplast envelope.; ",
"keyword": null,
"gene_ontology": "GO:0031969; chloroplast membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Chloroplast intermembrane space.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0052",
"definition": "The intermembrane space between the inner and the outer chloroplast membranes. ",
"synonyms": "Chloroplastic intermembrane space.; ",
"content": "Plastid, chloroplast intermembrane space.",
"is_a": "Plastid intermembrane space.; ",
"part_of": "Chloroplast envelope.; ",
"keyword": null,
"gene_ontology": "GO:0031972; chloroplast intermembrane space; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Chloroplast inner membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0051",
"definition": "The inner membrane of a chloroplast is the membrane which separates the chloroplast stroma from the intermembrane space. ",
"synonyms": "Chloroplastic inner membrane.; ",
"content": "Plastid, chloroplast inner membrane.",
"is_a": "Chloroplast membrane.; Plastid inner membrane.; ",
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0009706; chloroplast inner membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Chloroplast envelope.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0050",
"definition": "The envelope of a chloroplast comprises the inner and outer chloroplast membrane including the intermembrane space. ",
"synonyms": "Chloroplastic envelope.; ",
"content": "Plastid, chloroplast envelope.",
"is_a": "Plastid envelope.; ",
"part_of": "Chloroplast.; ",
"keyword": null,
"gene_ontology": "GO:0009941; chloroplast envelope; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Chloroplast.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0049",
"definition": "The most common form of plastid, the chloroplast is a photosynthetic organelle found in all photosynthetic eukaryotes except glaucocystophyte algae (where it is called a cyanelle) and Paulinella species (where it is called an organellar chromatophore). In green (photosynthetic) tissue they house the machinery necessary for pigment biosynthesis, amino acid synthesis, lipid metabolism etc, as well as the machinery for photosynthesis and CO(2) fixation. They are surrounded by between 2 and 4 membranes and contain thylakoids in green tissue. ",
"synonyms": null,
"content": "Plastid, chloroplast.",
"is_a": "Plastid.; ",
"part_of": null,
"keyword": "KW-0150",
"gene_ontology": "GO:0009507; chloroplast; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Centrosome.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0048",
"definition": "The centrosome is a microtubule organizing center (MTOC) responsible for the nucleation and organisation of microtubules. It is composed of two orthogonally arranged centrioles, each one having a barrel shaped microtubule structure, and their surrounding pericentriolar material (PCM). ",
"synonyms": null,
"content": "Cytoplasm, cytoskeleton, microtubule organizing center, centrosome.",
"is_a": null,
"part_of": "Microtubule organizing center.; ",
"keyword": null,
"gene_ontology": "GO:0005813; centrosome; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Centromere.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0047",
"definition": "The centromere is a region of replicated eukaryotic chromosomes where the two chromatids are joined together. ",
"synonyms": "Chromosome, pericentric region.; ",
"content": "Chromosome, centromere.",
"is_a": null,
"part_of": "Chromosome.; ",
"keyword": "KW-0137",
"gene_ontology": "GO:0000775; chromosome, centromeric region; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Centriole.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0046",
"definition": "The centriole is a barrel-shaped microtubule-based structure. A pair of centrioles, embedded in the so-called pericentriolar material, constitute the centrosome, a microtubule organizing center of an eukaryotic cell. Centrioles are barrel-shaped microtubule-based structures organized in a 9-fold radial symmetry. Centriolar microtubule arrays usually consist of triplet microtubules, although doublets or singlets are present in some species. Centrioles are structurally related to (and often interconvertible with) basal bodies, the organelles required for the assembly of a cilium or flagellum. ",
"synonyms": null,
"content": "Cytoplasm, cytoskeleton, microtubule organizing center, centrosome, centriole.",
"is_a": null,
"part_of": "Centrosome.; ",
"keyword": null,
"gene_ontology": "GO:0005814; centriole; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Centriolar satellite.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0485",
"definition": "Centriolar satellites are nonmembranous, electron-dense and spherical cytoplasmic granules of about 70-100 nm in diameter, occurring around centrosomes in most vertebrate cell types. They contain a number of centrosomal proteins. Centriolar satellites have the ability to move along microtubules, toward their minus ends, i.e. toward centrosomes. Their number increase during interphase and decrease during mitosis. ",
"synonyms": "Massule; satellites.; ",
"content": "Cytoplasm, cytoskeleton, microtubule organizing center, centrosome, centriolar satellite.",
"is_a": null,
"part_of": "Centrosome.; ",
"keyword": null,
"gene_ontology": "GO:0034451; centriolar satellite; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Cell wall.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0041",
"definition": "The complex and rigid layer surrounding the cell. Cell walls are found in bacteria, archaea, fungi, plants, and algae. The cell wall envelopes the inner or plasma membrane in all bacteria and is surrounded by the outer membrane in bacteria with 2 membranes (Gram- negative). Bacterial cell walls contain peptidoglycan while those of archaea are not made of peptidoglycan, but some archaea may contain pseudopeptidoglycan, which is composed of N-acetyltalosaminuronic acid, instead of N-acetyl muramic acid in peptidoglycan. The plant cell wall is made of fibrils of cellulose embedded in a matrix of several other kinds of polymers such as pectin and lignin. Algal cell walls are usually composed of cellulose, glycoproteins, sporopollenin, calcium and various polysaccharides such as manosyl, xylanes, alginic acid. Diatom cell walls (or frustules) contain silica. The cell wall plays a role in cell shape, cell stability and development, and protection against environmental dangers. ",
"synonyms": null,
"content": "Secreted, cell wall.",
"is_a": null,
"part_of": "Cell envelope.; Secreted.; ",
"keyword": "KW-0134",
"gene_ontology": "GO:0005618; cell wall; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Cellular thylakoid membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0045",
"definition": "The membrane of the cellular thylakoid. ",
"synonyms": null,
"content": "Cellular thylakoid membrane.",
"is_a": "Membrane.; ",
"part_of": "Cellular thylakoid.; Endomembrane system.; ",
"keyword": null,
"gene_ontology": "GO:0031676; plasma membrane-derived thylakoid membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Cellular thylakoid lumen.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0044",
"definition": "The lumen of the cellular thylakoid. ",
"synonyms": null,
"content": "Cellular thylakoid lumen.",
"is_a": null,
"part_of": "Cellular thylakoid.; ",
"keyword": null,
"gene_ontology": "GO:0031979; plasma membrane-derived thylakoid lumen; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Cellular thylakoid.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0043",
"definition": "A bacterial thylakoid membrane usually formed by extensive invaginations of the cell inner (plasma) membrane. In cyanobacteria thylakoids house the photosynthetic machinery and pigments. In Synechocystis sp. strain PCC 6803 the thylakoid membranes are physically discontinuous from the plasma membrane, and thus represent bona fide intracellular organelles. ",
"synonyms": "Bacterial thylakoid.; ",
"content": "Cellular thylakoid.",
"is_a": "Thylakoid.; ",
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0030075; bacterial thylakoid; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Cellular chromatophore membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0042",
"definition": "The cellular chromatophore membrane is the plasma-membrane derived internal, photosynthetic membrane found in the cytoplasm in purple photosynthetic bacteria. They contain the reaction centers, antennae complexes, cytochrome bc1 complex and the F(0)F(1)-ATPase. ",
"synonyms": "Chromatophore membrane.; ",
"content": "Cellular chromatophore membrane.",
"is_a": "Membrane.; ",
"part_of": "Endomembrane system.; ",
"keyword": null,
"gene_ontology": "GO:0042717; plasma membrane-derived chromatophore membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Cell tip.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0456",
"definition": "The region at either end of the longest axis of a cylindrical or elongated cell, where polarized growth may occur. ",
"synonyms": null,
"content": "Cell tip.",
"is_a": null,
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0051286; cell tip; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Cell surface.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0310",
"definition": "The outermost side of the cell. ",
"synonyms": null,
"content": "Cell surface.",
"is_a": null,
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0009986; cell surface; ",
"annotation": "Try to use a child/narrower/more specific term instead ",
"references": null,
"links": null
}
]
}