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{
"count": 543,
"next": "https://cinder.proteo.info/api/subcellular_locations/?format=api&limit=20&offset=500&ordering=synonyms",
"previous": "https://cinder.proteo.info/api/subcellular_locations/?format=api&limit=20&offset=460&ordering=synonyms",
"results": [
{
"location_identifier": "Plastoglobule.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0217",
"definition": "A plastoglobule is a conspicuous lipid-containing structure in the chloroplast stroma thought to serve as lipid reservoirs for thylakoid membranes. ",
"synonyms": null,
"content": "Plastid, chloroplast, plastoglobule.",
"is_a": null,
"part_of": "Chloroplast.; ",
"keyword": null,
"gene_ontology": "GO:0010287; plastoglobule; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Podosome.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0295",
"definition": "The podosome is a ring-like cell protrusion which mediates cell- extracellular matrix interactions. Podosomes are composed of an actin- bundle core, flanked by a ring containing adhesion proteins connected to the core via dome-like radial actin fibers. Podosomes are rich in actin filaments, matrix-degrading enzymes, focal adhesion molecules and molecules involved in vesicle trafficking. These structures protrudes into the extracellular matrix and are essential for invasion and metastasis. Classical podosomes are highly dynamic structures formed by cell types of monocytic origin, such as macrophages, dendritic cells, and osteoclasts. ",
"synonyms": null,
"content": "Cell projection, podosome.",
"is_a": "Cell junction.; Cell projection.; ",
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0002102; podosome; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Porosome.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0218",
"definition": "The porosome is an actin-regulated dynamic structure at the cell membrane, where membrane-bound secretory vesicles dock and fuse to release their contents. ",
"synonyms": null,
"content": "Cell membrane, porosome.",
"is_a": null,
"part_of": "Cell membrane.; ",
"keyword": null,
"gene_ontology": "GO:0033012; porosome; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Postsynaptic density membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0520",
"definition": "The membrane component of the postsynaptic specialization. Part of the postsynaptic membrane attached to the postsynaptic density in which the population of neurotransmitter receptors involved in synaptic transmission are concentrated and organized. ",
"synonyms": null,
"content": "Postsynaptic density membrane.",
"is_a": null,
"part_of": "Postsynaptic cell membrane.; Postsynaptic density.; ",
"keyword": null,
"gene_ontology": "GO:0098839; postsynaptic density membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Postsynaptic early endosome.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0523",
"definition": "An early endosome of the postsynapse. It acts as the major sorting station on the endocytic pathway, targeting neurotransmitter receptors for degredation or recycling. ",
"synonyms": null,
"content": "Postsynaptic early endosome.",
"is_a": "Early endosome.; ",
"part_of": "Postsynaptic endosome.; ",
"keyword": null,
"gene_ontology": "GO:0098842; postsynaptic early endosome; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Postsynaptic early endosome membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0534",
"definition": "The membrane surrounding a postsynaptic early endosome ",
"synonyms": null,
"content": "Postsynaptic early endosome membrane.",
"is_a": "Membrane.; ",
"part_of": "Postsynaptic early endosome.; ",
"keyword": null,
"gene_ontology": "GO:0098896; postsynaptic early endosome membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Postsynaptic endocytic zone.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0528",
"definition": "Stably positioned sites of clathrin adjacent to the postsynaptic density (PSD). The physical link with the PSD ensures localized endocytosis and recycling by recapturing and maintaining a proximate pool of cycling postsynaptic receptors. ",
"synonyms": null,
"content": "Postsynaptic endocytic zone.",
"is_a": null,
"part_of": "Postsynapse.; ",
"keyword": null,
"gene_ontology": "GO:0098843; postsynaptic endocytic zone; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Postsynaptic recycling endosome.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0524",
"definition": "A recycling endosome of the postsynapse. It is involved in recycling of neurotransmitter receptors to the postsynaptic membrane and serves as intracellular reserve pools of neurotransmitter receptors. In some cases at least, this recycling is activated by postsynaptic signalling and so can play a role in long term potentiation. ",
"synonyms": null,
"content": "Postsynaptic recycling endosome.",
"is_a": "Recycling endosome.; Postsynaptic endosome.; ",
"part_of": "Postsynapse.; ",
"keyword": null,
"gene_ontology": "GO:0098837; postsynaptic recycling endosome; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Postsynaptic recycling endosome membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0533",
"definition": "The membrane surrounding a postsynaptic recycling endosome ",
"synonyms": null,
"content": "Postsynaptic recycling endosome membrane.",
"is_a": "Membrane.; ",
"part_of": "Postsynaptic recycling endosome.; ",
"keyword": null,
"gene_ontology": "GO:0098944; postsynaptic recycling endosome membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Presynaptic active zone.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0519",
"definition": "The active zone is the region that lies at the interface between the presynaptic terminal and the synaptic cleft and mediates neurotransmitter release. Consists of an electron dense protein network called the cytomatrix at the active zone (CAZ) that is tightly anchored to the presynaptic membrane, and precisely aligned with post- synaptic receptors. CAZ docks and fuses synaptic vesicles, recruits voltage-gated Ca(2+) channels to the presynaptic membrane to allow fast synchronous excitation/release coupling and mediates short- and long-term presynaptic plasticity. ",
"synonyms": null,
"content": "Presynaptic active zone.",
"is_a": null,
"part_of": "Presynapse.; ",
"keyword": null,
"gene_ontology": "GO:0048786; presynaptic active zone; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Presynaptic active zone membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0527",
"definition": "The membrane portion of the presynaptic active zone that allows presynaptic vesicles to dock, fuse, and, ultimately, release neurotransmitter into the synaptic cleft. ",
"synonyms": null,
"content": "Presynaptic active zone membrane.",
"is_a": null,
"part_of": "Presynaptic cell membrane.; Presynaptic active zone.; ",
"keyword": null,
"gene_ontology": "GO:0048787; presynaptic active zone membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Presynaptic endosome.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0525",
"definition": "An endosome present in the presynapse that fuses with endocytic vesicles arising in the presynaptic endocytic zone. Presynaptic endosomes are involved on synaptic vesicle regeneration in GABAergic synapses at least, even if different modes of synaptic vesicles recycling exist depending on the type of synapse. ",
"synonyms": null,
"content": "Presynaptic endosome.",
"is_a": "Endosome.; ",
"part_of": "Presynapse.; ",
"keyword": null,
"gene_ontology": "GO:0098830; presynaptic endosome; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Primary cell wall.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0225",
"definition": "Trimary cell wall is the first-formed wall layer of still growing plant cells (at least potentially). This wall is part of the apoplast which itself is largely self-contiguous and contains everything that is located between the plasma membrane and the cuticle. Primary walls are composed predominantly of polysaccharides, smaller proportions of glycoproteins and, in some specialized cell types, various noncarbohydrate substances such as lignin, suberin, cutin, cutan or silica. It is strong but usually thin, flexible, and capable of both plastic and elastic extension. It governs the rate and direction of cell expansion, and thus the ultimate size and shape of the cell. ",
"synonyms": null,
"content": "Secreted, primary cell wall.",
"is_a": "Cell wall.; ",
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0009530; primary cell wall; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Protoplasm.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0229",
"definition": "The protoplasm is the viscid, translucent, polyphasic colloid with water as the continuous phase that makes up the essential material of all plant and animal cells. It is composed mainly of nucleic acids, proteins, lipids, carbohydrates, and inorganic salts. The protoplasm surrounding the nucleus is known as the cytoplasm and that composing the nucleus is the nucleoplasm. ",
"synonyms": null,
"content": "Protoplasm.",
"is_a": null,
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0005622; intracellular anatomical structure; ",
"annotation": "Not used. ",
"references": null,
"links": null
},
{
"location_identifier": "Pseudopodium membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0299",
"definition": "The portion of the cell membrane surrounding a pseudopodium. ",
"synonyms": null,
"content": "Cell projection, pseudopodium membrane.",
"is_a": null,
"part_of": "Cell membrane.; Pseudopodium.; ",
"keyword": null,
"gene_ontology": "GO:0031260; pseudopodium membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Pseudopodium tip.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0471",
"definition": "The end of the pseudopodium distal to the body of the cell. ",
"synonyms": null,
"content": "Cell projection, pseudopodium tip.",
"is_a": null,
"part_of": "Pseudopodium.; ",
"keyword": null,
"gene_ontology": null,
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Rhabdomere.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0551",
"definition": "A specialized organelle found in the photoreceptor cells of an ommatidium (the individual component of the arthropod compound eye) and the photoreceptor cells in the eye of cephalopods. Composed of thousands of tightly packed microvilli that expand the membrane surface area to accommodate millions of molecules of rhodopsin. Orthologous to the tightly packed membrane discs of the ciliary outer segment in vertebrate photoreceptor cells. ",
"synonyms": null,
"content": "Cell projection, rhabdomere.",
"is_a": "Cell projection.; ",
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0016028; rhabdomere; ",
"annotation": "The rhabdomere is a specialised structure of photoreceptor cells found in the compound eyes of arthropods like insects, crustaceans and millipedes, and cephalopods, like octopus and squid. This term should be used only for invertebrates such as arthropods and cephalopods. ",
"references": null,
"links": null
},
{
"location_identifier": "Rhabdomere membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0552",
"definition": "The portion of the plasma membrane surrounding the rhabdomere. ",
"synonyms": null,
"content": "Cell projection, rhabdomere membrane.",
"is_a": "Rhabdomere.; ",
"part_of": "Cell membrane.; ",
"keyword": null,
"gene_ontology": "GO:0033583; rhabdomere membrane; ",
"annotation": "The rhabdomere is a specialised structure of photoreceptor cells found in the compound eyes of arthropods like insects, crustaceans and millipedes. This term should be used only for only for invertebrates such as arthropods and cephalopods . ",
"references": null,
"links": null
},
{
"location_identifier": "Rhoptry lumen.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0346",
"definition": "The rhoptry compartment bounded by the membrane of a rhoptry. ",
"synonyms": null,
"content": "Cytoplasmic vesicle, secretory vesicle, rhoptry lumen.",
"is_a": "Secretory vesicle lumen.; ",
"part_of": "Rhoptry.; ",
"keyword": null,
"gene_ontology": "GO:0034591; rhoptry lumen; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Rhoptry membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0234",
"definition": "The membrane surrounding a rhoptry. ",
"synonyms": null,
"content": "Cytoplasmic vesicle, secretory vesicle, rhoptry membrane.",
"is_a": "Secretory vesicle membrane.; ",
"part_of": "Rhoptry.; ",
"keyword": null,
"gene_ontology": "GO:0033016; rhoptry membrane; ",
"annotation": null,
"references": null,
"links": null
}
]
}