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{
"count": 543,
"next": "https://cinder.proteo.info/api/subcellular_locations/?format=api&limit=20&offset=520&ordering=-location_identifier",
"previous": "https://cinder.proteo.info/api/subcellular_locations/?format=api&limit=20&offset=480&ordering=-location_identifier",
"results": [
{
"location_identifier": "Basal cell membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0024",
"definition": "The basal cell membrane is the fraction of the plasma membrane at the basal side of the cell, which faces the underlying connective tissue. ",
"synonyms": "Basal plasma membrane.; ",
"content": "Basal cell membrane.",
"is_a": null,
"part_of": "Cell membrane.; ",
"keyword": null,
"gene_ontology": "GO:0009925; basal plasma membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Barrier septum.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0454",
"definition": "The barrier septum, is a septum which spans a cell and does not allow exchange of organelles or cytoplasm between compartments. ",
"synonyms": null,
"content": "Barrier septum.",
"is_a": "Cell septum.; ",
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0000935; division septum; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Bacterial microcompartment.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0544",
"definition": "Bacterial microcompartments (BMC) are proteinaceous polyhedral shells that encapsulate enzymes. The selectively permeable organelles protect their contents from the cytoplasm and/or the cytoplasm from reactants in their interior. The best characterized BMC is the carboxysome, which encapsulates RuBisCO and carbonic anhydrase, and enhances autotrophic CO(2) fixation. Other characterized BMCs encapsulate enzymes involved in ethanolamine or propanediol degradation; both pathways make toxic intermediates. Artifical BMCs can be expressed and filled with cargo proteins for biotechnological uses. BMCs are found in many bacterial phyla; in most cases their cargo is unknown. ",
"synonyms": "Metabolosome; Polyhedral organelle.; ",
"content": "Bacterial microcompartment.",
"is_a": null,
"part_of": null,
"keyword": "KW-1283",
"gene_ontology": "GO:0031469; bacterial microcompartment; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Bacterial flagellum hook.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0357",
"definition": "The hook of a bacterial flagellum connects the basal body and the filament and acts as a universal joint. This flexible hinge relays the energy generated by the motor into torque formation that is transferred onto the rigid filament. ",
"synonyms": "Bacterial flagella hook; Bacterial flagellar hook.; ",
"content": "Bacterial flagellum hook.",
"is_a": null,
"part_of": "Bacterial flagellum.; ",
"keyword": null,
"gene_ontology": "GO:0009424; bacterial-type flagellum hook; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Bacterial flagellum filament.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0358",
"definition": "The bacterial flagellar filament is made of polymerized flagellin. ",
"synonyms": "Bacterial flagella filament; Bacterial flagellar filament.; ",
"content": "Bacterial flagellum filament.",
"is_a": null,
"part_of": "Bacterial flagellum.; ",
"keyword": null,
"gene_ontology": "GO:0009420; bacterial-type flagellum filament; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Bacterial flagellum basal body.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0142",
"definition": "The basal body of a bacterial flagellum is a rod and a system of rings embedded in the cell envelope. Gram-negative flagella usually have an L ring in the plane of the lipopolysaccharide in the outer membrane, a periplasmic P ring in the plane of the peptidoglycan around the flagellar rod and a MS ring that is located within and above the cytoplasmic membrane. A C ring extends into the cytoplasm. The rod is a major component of the flagellar basal body and it spans the bacterial periplasm. The L and P rings are not found in Gram-positive bacteria. ",
"synonyms": "Bacterial flagellar basal body; Bacterial flagellar kinetosome;; Bacterial flagellar motor.; ",
"content": "Bacterial flagellum basal body.",
"is_a": null,
"part_of": "Bacterial flagellum.; ",
"keyword": null,
"gene_ontology": "GO:0009425; bacterial-type flagellum basal body; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Bacterial flagellum.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0307",
"definition": "The flagellum of Bacteria is a long hair-like cell surface appendage. The flagellar apparatus consists of the flagellar filament made of polymerized flagellin (the propeller), the hook-like structure near the cell surface (the universal joint) and the basal body (the engine) which is a rod and a system of rings embedded in the cell envelope. The basal body and the hook anchor the whip-like filament to the cell surface. The flagellum is a rotating structure whose switches propels the cell through a liquid medium. ",
"synonyms": "Bacterial flagella; Bacterial flagellar apparatus.; ",
"content": "Bacterial flagellum.",
"is_a": null,
"part_of": null,
"keyword": "KW-0975",
"gene_ontology": "GO:0009288; bacterial-type flagellum; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Bacterial extracellular vesicle.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0489",
"definition": "Small membrane vesicle (< 1 um) that buds off a prokaryotic cell's plasma membrane, able to carry proteins, phospholipids, lipopolysaccharides, nucleic acids, viruses, etc. Bacterial extracellular vesicles are important in intercellular communication and pathogenesis, and can exist within host cells. ",
"synonyms": "Bacterial membrane vesicle; Membrane vesicle; Microvesicle.; ",
"content": "Extracellular vesicle, bacterial extracellular vesicle.",
"is_a": "Extracellular vesicle.; ",
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0097691; bacterial extracellular vesicle; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Axon.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0279",
"definition": "The axon is the long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter. ",
"synonyms": "Axon shaft.; ",
"content": "Cell projection, axon.",
"is_a": "Neuron projection.; ",
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0030424; axon; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Autophagosome membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0022",
"definition": "The membrane surrounding the autophagosome. ",
"synonyms": "Autophagic vacuolar membrane; Autophagic vacuole membrane;; Autophagosomal membrane.; ",
"content": "Cytoplasmic vesicle, autophagosome membrane.",
"is_a": "Cytoplasmic vesicle membrane.; ",
"part_of": "Autophagosome.; ",
"keyword": null,
"gene_ontology": "GO:0000421; autophagosome membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Autophagosome lumen.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0318",
"definition": "The autophagosomal compartment bounded by the autophagosomal membrane. ",
"synonyms": "Autophagic vacuolar lumen; Autophagic vacuole lumen;; Autophagosomal lumen.; ",
"content": "Cytoplasmic vesicle, autophagosome lumen.",
"is_a": "Cytoplasmic vesicle lumen.; ",
"part_of": "Autophagosome.; ",
"keyword": null,
"gene_ontology": "GO:0034423; autophagosome lumen; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Autophagosome.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0023",
"definition": "The autophagosome is a double membrane vesicle involved in the degradation of long-lived proteins, unnecessary or damaged organelles as well as other cellular constituents such as lipids or carbohydrates. Crescent-shape isolation membranes or phagophores can sequester cytoplasm and organelles giving rise to autophagosomes. The outer membrane of the autophagosomes then fuse with vacuoles and/or lysosomes and the inner membrane vesicles (termed autophagic bodies) are released into the vacuole/lysosome lumen. These vesicles are then lysed and the contents are degraded by resident hydrolases. ",
"synonyms": "Autophagic vacuole.; ",
"content": "Cytoplasmic vesicle, autophagosome.",
"is_a": "Cytoplasmic vesicle.; ",
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0005776; autophagosome; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Autolysosome membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0536",
"definition": "The membrane surrounding the autolysosome. ",
"synonyms": null,
"content": "Autolysosome membrane.",
"is_a": "Membrane.; ",
"part_of": "Autolysosome.; ",
"keyword": null,
"gene_ontology": "GO:0120281; autolysosome membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Autolysosome lumen.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0537",
"definition": "The autolysosome lumen is the area enclosed by the autolysosomal membrane. ",
"synonyms": "Degrading autophagic vacuole lumen.; ",
"content": "Autolysosome lumen.",
"is_a": null,
"part_of": "Autolysosome.; ",
"keyword": null,
"gene_ontology": "GO:0120282; autolysosome lumen; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Autolysosome.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0535",
"definition": "The autolysosome is a single-membrane organelle resulting from the fusion of a double-membrane autophagosome with a lysosome during macroautophagy. The outer membrane of the autophagosome fuses with the lysosome membrane whereas the inner membrane and the autophagic cargo are released into the lumen and degraded. Alternatively, the convergence of macroautophagy and endocytosis produces a single- membrane amphisome that also results in an autolysosome upon fusion with a lysosome. ",
"synonyms": "Degrading autophagic vacuole.; ",
"content": "Autolysosome.",
"is_a": "Autophagosome.; Lysosome.; ",
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0044754; autolysosome; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Attachment organelle membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0021",
"definition": "The membrane surrounding the attachment organelle. ",
"synonyms": "Terminal organelle membrane.; ",
"content": "Cell projection, attachment organelle membrane.",
"is_a": null,
"part_of": "Attachment organelle.; Cell membrane.; ",
"keyword": null,
"gene_ontology": "GO:0033111; attachment organelle membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Attachment organelle.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0020",
"definition": "The attachment organelle is a multifunctional polar structure found in several Mycoplasma species. This large and complex cell extension, whose predicted mass is greater than that of a vertebrate nuclear pore complex, is essential for adherence to host cells, is involved in gliding motility, and is associated with cell division. ",
"synonyms": "Terminal organelle.; ",
"content": "Cell projection, attachment organelle.",
"is_a": "Cell projection.; ",
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0033099; attachment organelle; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Ascus epiplasm.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0538",
"definition": "Ascus cytoplasm that is not packaged into ascospores. ",
"synonyms": null,
"content": "Ascus epiplasm.",
"is_a": null,
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0072324; ascus epiplasm; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Archaeal flagellum.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0306",
"definition": "The archaellum (archaeal flagellum) is the motility apparatus of archaea which propels the cell through liquid medium. The archaellum is the functional equivalent of the bacterial flagellum but its architecture, composition and mode of assembly is completely unrelated. The archaellum is thinner (10-15 nm) compared to the bacterial flagellum (18-24 nm). Its filament is assembled from archaellin subunits, which are N-glycosylated proteins. The archaellum is considered to be a type IV pilus-like structure. ",
"synonyms": "Archaeal flagella; Archaeal flagellar apparatus; Archaellum.; ",
"content": "Archaeal flagellum.",
"is_a": null,
"part_of": null,
"keyword": "KW-0974",
"gene_ontology": "GO:0097589; archaeal-type flagellum; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Apoplast.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0019",
"definition": "The apoplast is the \"non-living\" extracellular space that surrounds the symplast. It consists of cell walls and spaces between cells. Water and solutes can move freely in this framework, except at the endodermis in roots and stems where the apoplastic flow of ions is interrupted by the Casparian strip, forcing water to flow to symplast. ",
"synonyms": null,
"content": "Secreted, extracellular space, apoplast.",
"is_a": "Extracellular space.; ",
"part_of": null,
"keyword": "KW-0052",
"gene_ontology": "GO:0048046; apoplast; ",
"annotation": null,
"references": null,
"links": null
}
]
}