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{
"count": 543,
"next": "https://cinder.proteo.info/api/subcellular_locations/?format=api&limit=20&offset=80&ordering=-synonyms",
"previous": "https://cinder.proteo.info/api/subcellular_locations/?format=api&limit=20&offset=40&ordering=-synonyms",
"results": [
{
"location_identifier": "Cell junction.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0038",
"definition": "The cell junction is a cell-cell or cell-extracellular matrix contact within a tissue of a multicellular organism, especially abundant in epithelia. In vertebrates, there are three major types of cell junctions: anchoring junctions (e.g. adherens junctions), communicating junctions (e.g. gap junctions) and occluding junctions (e.g. tight junctions). ",
"synonyms": null,
"content": "Cell junction.",
"is_a": null,
"part_of": null,
"keyword": "KW-0965",
"gene_ontology": "GO:0070161; anchoring junction; ",
"annotation": "Add \"Cell membrane\" if the protein is clearly associated with the membrane. ",
"references": null,
"links": "https://www.ncbi.nlm.nih.gov/books/NBK26857/; "
},
{
"location_identifier": "Autolysosome membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0536",
"definition": "The membrane surrounding the autolysosome. ",
"synonyms": null,
"content": "Autolysosome membrane.",
"is_a": "Membrane.; ",
"part_of": "Autolysosome.; ",
"keyword": null,
"gene_ontology": "GO:0120281; autolysosome membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Acidocalcisome.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0002",
"definition": "The acidocalcisome is an electron-dense acidic organelle which contains a matrix of pyrophosphate and polyphosphates with bound calcium and other cations. Its limiting membrane possesses a number of pumps and exchangers for the uptake and release of these elements. The acidocalcisome does not belong to the endocytic pathway and may represent a branch of the secretory pathway in trypanosomatids and apicomplexan parasites. The acidocalcisome is possibly involved in polyphosphate and cation storage and in adaptation of these microoganisms to environmental stress. ",
"synonyms": null,
"content": "Acidocalcisome.",
"is_a": null,
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0020022; acidocalcisome; ",
"annotation": null,
"references": "PubMed=15738951; DOI=10.1038/nrmicro1097;; ",
"links": null
},
{
"location_identifier": "Cyanelle envelope.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0479",
"definition": "The envelope of a cyanelle comprises the inner and outer cyanelle membrane including the intermembrane space and the vestigal peptidoglycan layer. ",
"synonyms": null,
"content": "Plastid, cyanelle envelope.",
"is_a": "Plastid envelope.; ",
"part_of": "Cyanelle.; ",
"keyword": null,
"gene_ontology": "GO:0033112; cyanelle envelope; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Cell septum.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0455",
"definition": "A structure composed of peptidoglycan and often chitin in addition to other materials. It usually forms perpendicular to the long axis of a cell or hypha and grows centripetally from the cell wall to the center of the cell and often functions in the compartmentalization of a cell into two daughter cells. ",
"synonyms": null,
"content": "Cell septum.",
"is_a": null,
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0030428; cell septum; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Cell surface.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0310",
"definition": "The outermost side of the cell. ",
"synonyms": null,
"content": "Cell surface.",
"is_a": null,
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0009986; cell surface; ",
"annotation": "Try to use a child/narrower/more specific term instead ",
"references": null,
"links": null
},
{
"location_identifier": "Cell tip.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0456",
"definition": "The region at either end of the longest axis of a cylindrical or elongated cell, where polarized growth may occur. ",
"synonyms": null,
"content": "Cell tip.",
"is_a": null,
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0051286; cell tip; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Chloroplast thylakoid membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0058",
"definition": "The thylakoid membranes of a chloroplast is an internal system of interconnected membranes, that carry out the light reactions of photosynthesis. They are arranged into stacked and unstacked regions called grana and stroma thylakoids, respectively, that are differentially enriched in photosystem I and II complexes. Although extensive, the thylakoid network in an individual chloroplast is thought to comprise a single lumenal compartment. ",
"synonyms": null,
"content": "Plastid, chloroplast thylakoid membrane.",
"is_a": "Plastid thylakoid membrane.; ",
"part_of": "Chloroplast thylakoid.; ",
"keyword": null,
"gene_ontology": "GO:0009535; chloroplast thylakoid membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Cell wall.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0041",
"definition": "The complex and rigid layer surrounding the cell. Cell walls are found in bacteria, archaea, fungi, plants, and algae. The cell wall envelopes the inner or plasma membrane in all bacteria and is surrounded by the outer membrane in bacteria with 2 membranes (Gram- negative). Bacterial cell walls contain peptidoglycan while those of archaea are not made of peptidoglycan, but some archaea may contain pseudopeptidoglycan, which is composed of N-acetyltalosaminuronic acid, instead of N-acetyl muramic acid in peptidoglycan. The plant cell wall is made of fibrils of cellulose embedded in a matrix of several other kinds of polymers such as pectin and lignin. Algal cell walls are usually composed of cellulose, glycoproteins, sporopollenin, calcium and various polysaccharides such as manosyl, xylanes, alginic acid. Diatom cell walls (or frustules) contain silica. The cell wall plays a role in cell shape, cell stability and development, and protection against environmental dangers. ",
"synonyms": null,
"content": "Secreted, cell wall.",
"is_a": null,
"part_of": "Cell envelope.; Secreted.; ",
"keyword": "KW-0134",
"gene_ontology": "GO:0005618; cell wall; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Cyanelle thylakoid membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0085",
"definition": "The lipid bilayer membrane of any thylakoid within a cyanelle, a photosynthetic organelle of glaucocystophyte algae. ",
"synonyms": null,
"content": "Plastid, cyanelle thylakoid membrane.",
"is_a": "Plastid thylakoid membrane.; ",
"part_of": "Cyanelle thylakoid.; ",
"keyword": null,
"gene_ontology": "GO:0033115; cyanelle thylakoid membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Anammoxosome.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0491",
"definition": "The anammoxosome is a large intracytoplasmic compartment bounded by a single bilayer, ladderane-lipid-containing membrane present in bacteria that perform anaerobic ammonium oxidation (anammox). This organelle is the site of the anammox process, in which nitrite is used as the electron acceptor in the conversion of ammonium to dinitrogen (N2) gas and water. Anammox bacteria belong to the phylum Planctomycetes and are recognized as major players in the global nitrogen cycle. ",
"synonyms": null,
"content": "Anammoxosome.",
"is_a": null,
"part_of": null,
"keyword": null,
"gene_ontology": "GO:0044222; anammoxosome; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Cellular thylakoid lumen.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0044",
"definition": "The lumen of the cellular thylakoid. ",
"synonyms": null,
"content": "Cellular thylakoid lumen.",
"is_a": null,
"part_of": "Cellular thylakoid.; ",
"keyword": null,
"gene_ontology": "GO:0031979; plasma membrane-derived thylakoid lumen; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Cellular thylakoid membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0045",
"definition": "The membrane of the cellular thylakoid. ",
"synonyms": null,
"content": "Cellular thylakoid membrane.",
"is_a": "Membrane.; ",
"part_of": "Cellular thylakoid.; Endomembrane system.; ",
"keyword": null,
"gene_ontology": "GO:0031676; plasma membrane-derived thylakoid membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Cyanelle membrane.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0083",
"definition": "The membrane surrounding a cyanelle, a photosynthetic organelle of glaucocystophyte algae. Also used when it is not clear in which cyanelle membrane (outer membrane, inner membrane or thylakoid) a protein is found. ",
"synonyms": null,
"content": "Plastid, cyanelle membrane.",
"is_a": "Plastid membrane.; ",
"part_of": "Cyanelle.; ",
"keyword": null,
"gene_ontology": "GO:0033113; cyanelle membrane; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Centriole.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0046",
"definition": "The centriole is a barrel-shaped microtubule-based structure. A pair of centrioles, embedded in the so-called pericentriolar material, constitute the centrosome, a microtubule organizing center of an eukaryotic cell. Centrioles are barrel-shaped microtubule-based structures organized in a 9-fold radial symmetry. Centriolar microtubule arrays usually consist of triplet microtubules, although doublets or singlets are present in some species. Centrioles are structurally related to (and often interconvertible with) basal bodies, the organelles required for the assembly of a cilium or flagellum. ",
"synonyms": null,
"content": "Cytoplasm, cytoskeleton, microtubule organizing center, centrosome, centriole.",
"is_a": null,
"part_of": "Centrosome.; ",
"keyword": null,
"gene_ontology": "GO:0005814; centriole; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Chloroplast thylakoid.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0056",
"definition": "The thylakoid of a chloroplast is an internal system of interconnected membranes, that carry out the light reactions of photosynthesis. They are arranged into stacked and unstacked regions called grana and stroma thylakoids, respectively, that are differentially enriched in photosystem I and II complexes. Although extensive, the thylakoid network in an individual chloroplast is thought to comprise a single lumenal compartment. ",
"synonyms": null,
"content": "Plastid, chloroplast thylakoid.",
"is_a": "Plastid thylakoid.; ",
"part_of": "Chloroplast.; ",
"keyword": null,
"gene_ontology": "GO:0009534; chloroplast thylakoid; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Centrosome.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0048",
"definition": "The centrosome is a microtubule organizing center (MTOC) responsible for the nucleation and organisation of microtubules. It is composed of two orthogonally arranged centrioles, each one having a barrel shaped microtubule structure, and their surrounding pericentriolar material (PCM). ",
"synonyms": null,
"content": "Cytoplasm, cytoskeleton, microtubule organizing center, centrosome.",
"is_a": null,
"part_of": "Microtubule organizing center.; ",
"keyword": null,
"gene_ontology": "GO:0005813; centrosome; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Chloroplast.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0049",
"definition": "The most common form of plastid, the chloroplast is a photosynthetic organelle found in all photosynthetic eukaryotes except glaucocystophyte algae (where it is called a cyanelle) and Paulinella species (where it is called an organellar chromatophore). In green (photosynthetic) tissue they house the machinery necessary for pigment biosynthesis, amino acid synthesis, lipid metabolism etc, as well as the machinery for photosynthesis and CO(2) fixation. They are surrounded by between 2 and 4 membranes and contain thylakoids in green tissue. ",
"synonyms": null,
"content": "Plastid, chloroplast.",
"is_a": "Plastid.; ",
"part_of": null,
"keyword": "KW-0150",
"gene_ontology": "GO:0009507; chloroplast; ",
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Cytolytic granule lumen.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0546",
"definition": "The cytolytic granule comparment bounded by the cytolytic granule membrane. ",
"synonyms": null,
"content": "Cytolytic granule lumen.",
"is_a": "Lysosome lumen.; ",
"part_of": "Cytolytic granule.; ",
"keyword": null,
"gene_ontology": null,
"annotation": null,
"references": null,
"links": null
},
{
"location_identifier": "Glyoxysome.",
"topology_identifier": null,
"orientation_identifier": null,
"accession": "SL-0131",
"definition": "The glyoxysome is a plant peroxisome, especially found in germinating seeds, involved in the breakdown and conversion of fatty acids to acetyl-CoA for the glyoxylate bypass. Since it is also rich in catalase, the glyoxysome may be related to the microbodies or peroxisomes or derived from them. ",
"synonyms": null,
"content": "Glyoxysome.",
"is_a": "Peroxisome.; ",
"part_of": null,
"keyword": "KW-0330",
"gene_ontology": "GO:0009514; glyoxysome; ",
"annotation": null,
"references": null,
"links": null
}
]
}